C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001EU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130635-ENSG00000160339 CGP 9606 9:134641774-134887520
GeneTranscriptPositionBiotype
ENSG00000130635 (COL5A1)
collagen, type V, alpha 1 		ENST00000371817 (COL5A1-001) 134641774-134844843 protein_coding
ENST00000371820 (COL5A1-003) 134824644-134835204 protein_coding
ENST00000460264 (COL5A1-002) 134822922-134830353 retained_intron
ENST00000463925 (COL5A1-009) 134808961-134810457 processed_transcript
ENST00000464187 (COL5A1-004) 134653185-134709227 processed_transcript
ENST00000465877 (COL5A1-007) 134824722-134832876 retained_intron
ENST00000469093 (COL5A1-008) 134731593-134732669 processed_transcript
ENST00000618395 (COL5A1-201) 134641805-134844840 protein_coding
ENSG00000160339 (FCN2)
ficolin (collagen/fibrinogen domain containing lectin) 2 		ENST00000291744 (FCN2-001) 134880812-134887520 protein_coding
ENST00000350339 (FCN2-201) 134880812-134887520 protein_coding
ENSG00000204011 (COL5A1-AS1)
COL5A1 antisense RNA 1 		ENST00000371813 (COL5A1-AS1-001) 134649385-134652843 antisense
ENSG00000232355 (RP11-263F14.3)
 ENST00000412680 (RP11-263F14.3-001) 134868236-134868475 unprocessed_pseudogene
ENSG00000264163 (MIR3689B)
microRNA 3689b 		ENST00000581772 (MIR3689B-201) 134850125-134850272 miRNA
ENSG00000266060 (AL603650.4)
 ENST00000583817 (AL603650.4-201) 134849813-134849960 miRNA
CIL_0001EU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026837-ENSMUSG00000026835 CGP 10090 2:27886425-28084885
GeneTranscriptPositionBiotype
ENSMUSG00000026835 (Fcnb)
ficolin B 		ENSMUST00000028179 (Fcnb-001) 28076378-28084885 protein_coding
ENSMUST00000117486 (Fcnb-002) 28078099-28084885 protein_coding
ENSMUST00000135472 (Fcnb-003) 28079739-28084885 protein_coding
ENSMUSG00000026837 (Col5a1)
collagen, type V, alpha 1 		ENSMUST00000028280 (Col5a1-001) 27886425-28039514 protein_coding
ENSMUST00000145423 (Col5a1-002) 28017441-28037015 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001EU_0001ENSG00000130635ENST00000371817ENST00000371820ENST00000460264ENST00000463925ENST00000464187ENST00000465877ENST00000469093ENST00000618395ENSG00000160339ENST00000291744ENST00000350339ENSG00000204011ENST00000371813ENSG00000232355ENST00000412680ENSG00000264163ENST00000581772ENSG00000266060ENST00000583817CIL_0001EU_0002ENSMUSG00000026835ENSMUST00000028179ENSMUST00000117486ENSMUST00000135472ENSMUSG00000026837ENSMUST00000028280ENSMUST00000145423
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001EU_0001ENSG00000130635ENST00000371817ENST00000371820ENST00000460264ENST00000618395ENSG00000160339ENST00000291744ENST00000350339ENSG00000204011ENST00000371813ENSG00000232355ENST00000412680ENSG00000264163ENST00000581772ENSG00000266060ENST00000583817CIL_0001EU_0002ENSMUSG00000026835ENSMUST00000028179ENSMUST00000117486ENSMUST00000135472ENSMUSG00000026837ENSMUST00000028280
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130635 ENST00000371817 5.551±0.00 9.747±0.00 0.269±0.00 N/A 16.544±9.55 5.544±2.12 1.633±1.20 4.799±0.00 3.035±2.33 2.949±2.46 0.403±0.00 23.342±17.23 76.962±10.15 6.440±4.70
ENST00000371820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.237±0.00
ENST00000460264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 226.347±0.00 N/A
ENST00000463925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618395 N/A N/A N/A 0.154±0.07 N/A 0.955±0.00 N/A N/A 1.030±0.17 N/A 1.012±0.00 0.835±0.00 N/A N/A
ENSG00000160339 ENST00000291744 0.470±0.00 0.455±0.00 N/A N/A 0.956±0.00 N/A N/A 10.636±9.36 84.115±0.00 N/A N/A N/A N/A 0.677±0.00
ENST00000350339 0.438±0.00 N/A N/A N/A 0.988±0.78 0.052±0.00 N/A 10.666±0.00 N/A 0.070±0.04 N/A 0.074±0.04 N/A 0.055±0.00
ENSG00000204011 ENST00000371813 N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A
ENSG00000232355 ENST00000412680 N/A 0.104±0.00 N/A N/A 0.223±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.375±0.00
ENSG00000264163 ENST00000581772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.635±0.50
ENSG00000266060 ENST00000583817 N/A N/A N/A N/A 1.791±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026835 ENSMUST00000028179 0.028±0.00 N/A N/A 0.047±0.00 0.091±0.04 0.116±0.00 N/A N/A 20.037±10.34 0.066±0.00 N/A N/A 0.005±0.00 N/A
ENSMUST00000117486 N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A 0.060±0.00 N/A 0.067±0.00 0.008±0.00 N/A
ENSMUST00000135472 N/A N/A N/A 0.058±0.00 N/A 0.472±0.00 N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A
ENSMUSG00000026837 ENSMUST00000028280 25.044±6.96 7.094±2.13 18.222±0.17 4.805±2.17 19.001±5.72 8.033±2.41 3.272±1.99 2.465±0.49 3.114±2.26 3.785±2.10 2.162±1.05 13.327±3.19 11.173±5.84 1.756±0.79
ENSMUST00000145423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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