C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CAP-GLY domain containing linker protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130779 CLIP1 9606 - 12:122271432-122422632 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302528 CLIP1-001 122271434-122380560 protein_coding
  ENST00000358808 CLIP1-201 122271434-122422569 protein_coding
  ENST00000361654 CLIP1-007 122271432-122422588 protein_coding
  ENST00000501271 CLIP1-014 122272461-122275823 retained_intron
  ENST00000514271 CLIP1-011 122334085-122344044 retained_intron
  ENST00000535290 CLIP1-017 122377721-122400014 protein_coding
  ENST00000536634 CLIP1-013 122272599-122279147 processed_transcript
  ENST00000537004 CLIP1-006 122351028-122395997 protein_coding
  ENST00000537178 CLIP1-002 122272043-122422632 protein_coding
  ENST00000538120 CLIP1-010 122272806-122280878 retained_intron
  ENST00000539080 CLIP1-016 122377796-122422612 protein_coding
  ENST00000540304 CLIP1-005 122332985-122395427 protein_coding
  ENST00000540338 CLIP1-003 122272834-122380494 protein_coding
  ENST00000540539 CLIP1-015 122272668-122278472 protein_coding
  ENST00000541108 CLIP1-004 122354910-122380559 nonsense_mediated_decay
  ENST00000541410 CLIP1-012 122341088-122356160 retained_intron
  ENST00000543205 CLIP1-009 122277368-122280058 retained_intron
  ENST00000545889 CLIP1-008 122271434-122364017 protein_coding
  ENST00000620786 CLIP1-202 122271434-122422569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302528ENST00000358808ENST00000361654ENST00000537178ENST00000540338ENST00000541108ENST00000545889ENST00000620786
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302528 N/A N/A N/A 1.092±0.00 N/A N/A N/A 4.919±0.00 2.853±0.00 3.921±0.00 N/A N/A N/A N/A
ENST00000358808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.809±0.00
ENST00000361654 2.287±0.00 4.684±0.00 N/A 1.699±0.79 N/A N/A 2.214±1.68 4.885±0.00 1.909±0.00 4.553±0.00 23.287±0.00 3.695±0.75 N/A 3.065±0.00
ENST00000537178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.825±0.00 21.570±0.00 8.670±0.00
ENST00000540338 5.270±0.00 2.911±0.00 N/A 5.628±0.00 N/A 4.923±0.00 4.861±0.00 N/A N/A N/A N/A 2.694±0.00 N/A 4.581±0.38
ENST00000541108 N/A N/A 5.257±0.00 N/A N/A N/A N/A N/A N/A N/A 23.748±0.00 N/A N/A N/A
ENST00000545889 3.864±0.00 3.057±0.00 N/A 4.671±2.75 4.724±0.00 8.654±0.00 N/A 2.760±0.73 1.856±0.00 6.461±0.00 25.225±0.00 4.041±1.14 10.622±0.00 3.427±0.83
ENST00000620786 N/A N/A N/A 0.794±0.00 N/A 2.298±0.00 5.281±2.74 2.473±0.00 2.348±1.39 N/A 31.105±20.49 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZE CIL_0002ZE_0001 CGP 12:122229564-122422632
CIL_0002ZD CIL_0002ZD_0001 CGP 12:122271432-122500595

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000776 TAS kinetochore
GO:0001578 IMP microtubule bundle formation
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005768 TAS endosome
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0005874 ISS microtubule
GO:0005881 IEA cytoplasmic microtubule
GO:0005882 TAS intermediate filament
GO:0006810 IEA transport
GO:0007067 TAS mitotic nuclear division
GO:0008017 IDA microtubule binding
GO:0008270 IDA:IEA zinc ion binding
GO:0015630 IMP microtubule cytoskeleton
GO:0015631 IDA tubulin binding
GO:0016020 IEA membrane
GO:0031116 IMP positive regulation of microtubule polymerization
GO:0031410 IEA cytoplasmic vesicle
GO:0035371 IDA microtubule plus-end
GO:0042803 TAS protein homodimerization activity
GO:0042995 IEA cell projection
GO:0044354 IDA macropinosome
GO:0044861 IEA protein transport into plasma membrane raft
GO:0046872 NAS metal ion binding
GO:0051010 IDA microtubule plus-end binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000049550 Clip1 CAP-GLY domain containing linker protein 1 protein_coding Mus_musculus

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