C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CAP-GLY domain containing linker protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000049550 Clip1 10090 - 5:123577795-123684618 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031382 Clip1-008 123579244-123656018 protein_coding
  ENSMUST00000063905 Clip1-003 123578833-123684325 protein_coding
  ENSMUST00000111561 Clip1-005 123577807-123684275 protein_coding
  ENSMUST00000111564 Clip1-002 123577795-123684322 protein_coding
  ENSMUST00000111566 Clip1-001 123577795-123684618 protein_coding
  ENSMUST00000125340 Clip1-010 123577818-123603810 retained_intron
  ENSMUST00000133545 Clip1-013 123586187-123617463 retained_intron
  ENSMUST00000137363 Clip1-007 123577807-123647877 protein_coding
  ENSMUST00000137602 Clip1-009 123579074-123612172 retained_intron
  ENSMUST00000144121 Clip1-006 123617657-123655908 nonsense_mediated_decay
  ENSMUST00000149410 Clip1-004 123617706-123666690 protein_coding
  ENSMUST00000154432 Clip1-012 123590069-123603719 retained_intron
  ENSMUST00000154672 Clip1-011 123579451-123617822 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031382ENSMUST00000063905ENSMUST00000111561ENSMUST00000111564ENSMUST00000111566ENSMUST00000125340ENSMUST00000133545ENSMUST00000137363ENSMUST00000137602ENSMUST00000144121ENSMUST00000149410ENSMUST00000154672
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031382 N/A 2.250±0.52 N/A 13.060±0.00 N/A N/A 4.724±0.13 N/A N/A 2.904±0.00 11.747±0.04 21.223±15.38 18.640±13.58 N/A
ENSMUST00000063905 1.302±0.00 N/A N/A 11.315±5.10 N/A 2.759±0.36 2.886±0.00 0.911±0.00 N/A N/A N/A 2.907±0.45 N/A 4.412±0.00
ENSMUST00000111561 N/A N/A N/A N/A N/A N/A N/A N/A 0.468±0.04 N/A 10.248±2.33 2.843±0.00 3.114±0.00 N/A
ENSMUST00000111564 5.135±0.19 2.477±0.83 8.023±0.31 N/A 4.625±0.50 3.934±2.00 7.412±1.89 3.879±0.39 1.909±0.59 9.862±0.94 20.761±8.55 4.635±3.67 6.580±2.06 N/A
ENSMUST00000111566 1.872±0.00 1.016±0.23 3.571±0.09 3.372±0.14 1.160±0.22 1.252±0.60 N/A 1.145±0.38 0.766±0.24 2.606±0.71 9.753±0.00 1.669±0.58 2.879±0.23 N/A
ENSMUST00000125340 4.554±1.26 8.808±3.02 9.543±0.70 N/A 3.709±0.58 3.376±0.00 13.253±0.00 3.374±0.78 1.894±0.75 7.530±1.17 23.411±5.14 3.780±1.29 2.704±0.00 N/A
ENSMUST00000133545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.281±0.00 N/A
ENSMUST00000137363 N/A 2.619±1.05 N/A 13.102±7.14 1.322±0.00 2.145±0.85 N/A N/A N/A N/A N/A 3.788±1.11 6.712±0.00 N/A
ENSMUST00000137602 N/A N/A N/A N/A N/A 2.748±0.45 N/A N/A N/A N/A N/A 3.780±0.95 N/A 36.261±7.83
ENSMUST00000144121 N/A 2.873±0.89 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.210±0.00
ENSMUST00000149410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.040±11.60
ENSMUST00000154672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.258±62.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZE CIL_0002ZE_0002 CGP 5:123528764-123684618
CIL_0002ZD CIL_0002ZD_0002 CGP 5:123577795-123721044

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001578 ISS microtubule bundle formation
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005813 IEA centrosome
GO:0005874 IDA microtubule
GO:0005881 IDA cytoplasmic microtubule
GO:0008017 IDA microtubule binding
GO:0008270 IEA zinc ion binding
GO:0015630 ISS microtubule cytoskeleton
GO:0015631 ISS tubulin binding
GO:0016020 IEA membrane
GO:0031116 ISS positive regulation of microtubule polymerization
GO:0031410 IEA cytoplasmic vesicle
GO:0035371 IDA microtubule plus-end
GO:0042995 IEA cell projection
GO:0044354 ISS macropinosome
GO:0044861 IMP protein transport into plasma membrane raft
GO:0051010 IDA microtubule plus-end binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000130779 CLIP1 CAP-GLY domain containing linker protein 1 protein_coding Homo_sapiens

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