C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CAP-GLY domain containing linker protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361654 CLIP1-007 ENSG00000130779 9606 - 12:122271432-122422588 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartKidneyLiverLungMuscleOvaryTestisENST00000361654
Transcript ID Adipose Adrenal Brain Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000361654 2.287±0.00 4.684±0.00 1.699±0.79 2.214±1.68 4.885±0.00 1.909±0.00 4.553±0.00 23.287±0.00 3.695±0.75 3.065±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZE CIL_0002ZE_0001 CGP 12:122229564-122422632
CIL_0002ZD CIL_0002ZD_0001 CGP 12:122271432-122500595

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111564 Clip1-002 protein_coding Mus_musculus 0 5001
ENSMUST00000111561 Clip1-005 protein_coding Mus_musculus 0 2608
ENSMUST00000111566 Clip1-001 protein_coding Mus_musculus 0 2608
ENSMUST00000137363 Clip1-007 protein_coding Mus_musculus 0 2460
ENSMUST00000031382 Clip1-008 protein_coding Mus_musculus 0 2231
ENSMUST00000063905 Clip1-003 protein_coding Mus_musculus 0 2135
ENSMUST00000137602 Clip1-009 retained_intron Mus_musculus 0 1471
ENSMUST00000125340 Clip1-010 retained_intron Mus_musculus 0 1461
ENSMUST00000149410 Clip1-004 protein_coding Mus_musculus 0 1242
ENSMUST00000154672 Clip1-011 protein_coding Mus_musculus 0 1168
ENSMUST00000144121 Clip1-006 nonsense_mediated_decay Mus_musculus 0 970
ENSMUST00000133545 Clip1-013 retained_intron Mus_musculus 0 689
ENSMUST00000036999 Clip2-201 protein_coding Mus_musculus 0 267
ENSMUST00000100647 Clip2-202 protein_coding Mus_musculus 0 265
ENSMUST00000154432 Clip1-012 retained_intron Mus_musculus 0 255

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