C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CAP-GLY domain containing linker protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000545889 CLIP1-008 ENSG00000130779 9606 - 12:122271434-122364017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000545889
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000545889 3.864±0.00 3.057±0.00 4.671±2.75 4.724±0.00 8.654±0.00 2.760±0.73 1.856±0.00 6.461±0.00 25.225±0.00 4.041±1.14 10.622±0.00 3.427±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZE CIL_0002ZE_0001 CGP 12:122229564-122422632
CIL_0002ZD CIL_0002ZD_0001 CGP 12:122271432-122500595

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000137363 Clip1-007 protein_coding Mus_musculus 0 4169
ENSMUST00000063905 Clip1-003 protein_coding Mus_musculus 0 3843
ENSMUST00000111561 Clip1-005 protein_coding Mus_musculus 0 2486
ENSMUST00000111566 Clip1-001 protein_coding Mus_musculus 0 2486
ENSMUST00000111564 Clip1-002 protein_coding Mus_musculus 0 2486
ENSMUST00000031382 Clip1-008 protein_coding Mus_musculus 0 2109
ENSMUST00000137602 Clip1-009 retained_intron Mus_musculus 0 1471
ENSMUST00000125340 Clip1-010 retained_intron Mus_musculus 0 1461
ENSMUST00000154672 Clip1-011 protein_coding Mus_musculus 0 1168
ENSMUST00000149410 Clip1-004 protein_coding Mus_musculus 0 1109
ENSMUST00000144121 Clip1-006 nonsense_mediated_decay Mus_musculus 0 870
ENSMUST00000133545 Clip1-013 retained_intron Mus_musculus 0 689
ENSDART00000111509 CLIP1 (2 of 2)-201 protein_coding Danio_rerio 0 355
ENSMUST00000154432 Clip1-012 retained_intron Mus_musculus 0 255
ENSMUST00000100647 Clip2-202 protein_coding Mus_musculus 0 230
ENSMUST00000036999 Clip2-201 protein_coding Mus_musculus 2.94273e-44 185

Loading