C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CAP-GLY domain containing linker protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540338 CLIP1-003 ENSG00000130779 9606 - 12:122272834-122380494 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartOvaryTestisENST00000540338
Transcript ID Adipose Adrenal Brain Colon Heart Ovary Testis
ENST00000540338 5.270±0.00 2.911±0.00 5.628±0.00 4.923±0.00 4.861±0.00 2.694±0.00 4.581±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZE CIL_0002ZE_0001 CGP 12:122229564-122422632
CIL_0002ZD CIL_0002ZD_0001 CGP 12:122271432-122500595

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000776 TAS kinetochore
GO:0001578 IMP microtubule bundle formation
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005768 TAS endosome
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0005874 ISS microtubule
GO:0005882 TAS intermediate filament
GO:0006810 IEA transport
GO:0007067 TAS mitotic nuclear division
GO:0008017 IDA microtubule binding
GO:0008270 IDA:IEA zinc ion binding
GO:0015630 IMP microtubule cytoskeleton
GO:0015631 IDA tubulin binding
GO:0016020 IEA membrane
GO:0031116 IMP positive regulation of microtubule polymerization
GO:0031410 IEA cytoplasmic vesicle
GO:0035371 IDA microtubule plus-end
GO:0042803 TAS protein homodimerization activity
GO:0042995 IEA cell projection
GO:0044354 IDA macropinosome
GO:0046872 NAS metal ion binding
GO:0051010 IDA microtubule plus-end binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031382 Clip1-008 protein_coding Mus_musculus 0 4977
ENSMUST00000111561 Clip1-005 protein_coding Mus_musculus 0 3326
ENSMUST00000111566 Clip1-001 protein_coding Mus_musculus 0 3140
ENSMUST00000144121 Clip1-006 nonsense_mediated_decay Mus_musculus 0 2721
ENSMUST00000111564 Clip1-002 protein_coding Mus_musculus 0 2224
ENSMUST00000137363 Clip1-007 protein_coding Mus_musculus 0 2084
ENSMUST00000063905 Clip1-003 protein_coding Mus_musculus 0 1991
ENSMUST00000137602 Clip1-009 retained_intron Mus_musculus 0 1399
ENSMUST00000154672 Clip1-011 protein_coding Mus_musculus 0 1168
ENSMUST00000149410 Clip1-004 protein_coding Mus_musculus 0 1103
ENSMUST00000125340 Clip1-010 retained_intron Mus_musculus 0 1085
ENSMUST00000133545 Clip1-013 retained_intron Mus_musculus 0 689
ENSMUST00000036999 Clip2-201 protein_coding Mus_musculus 0 265
ENSMUST00000100647 Clip2-202 protein_coding Mus_musculus 0 265
ENSMUST00000154432 Clip1-012 retained_intron Mus_musculus 0 255

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