C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Cdc42 guanine nucleotide exchange factor (GEF) 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131089 ARHGEF9 9606 - X:63634967-63809274 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000253401 ARHGEF9-001 63634967-63755113 protein_coding
  ENST00000374870 ARHGEF9-013 63634971-63755089 protein_coding
  ENST00000374872 ARHGEF9-004 63637982-63755127 protein_coding
  ENST00000374878 ARHGEF9-002 63634967-63785546 protein_coding
  ENST00000437457 ARHGEF9-008 63636331-63785524 protein_coding
  ENST00000466925 ARHGEF9-006 63637982-63674138 protein_coding
  ENST00000495564 ARHGEF9-003 63637746-63755143 nonsense_mediated_decay
  ENST00000498761 ARHGEF9-005 63637982-63644266 retained_intron
  ENST00000623417 ARHGEF9-019 63678496-63809274 protein_coding
  ENST00000623517 ARHGEF9-007 63637690-63785558 protein_coding
  ENST00000623566 ARHGEF9-016 63697221-63755335 protein_coding
  ENST00000623951 ARHGEF9-015 63754284-63755070 processed_transcript
  ENST00000624210 ARHGEF9-014 63637840-63755078 protein_coding
  ENST00000624355 ARHGEF9-009 63697276-63785215 protein_coding
  ENST00000624387 ARHGEF9-018 63706263-63724975 processed_transcript
  ENST00000624538 ARHGEF9-017 63724532-63755032 protein_coding
  ENST00000624783 ARHGEF9-020 63637982-63657990 processed_transcript
  ENST00000624843 ARHGEF9-010 63637985-63755063 protein_coding
  ENST00000625116 ARHGEF9-011 63678504-63785215 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253401ENST00000374870ENST00000374878ENST00000437457ENST00000495564ENST00000623517ENST00000623566ENST00000624210ENST00000624783ENST00000624843
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253401 1.034±0.00 N/A N/A 3.624±0.00 N/A N/A 0.454±0.00 N/A 0.892±0.73 N/A N/A 1.158±0.67 0.714±0.11 N/A
ENST00000374870 N/A 1.453±0.00 0.941±0.00 15.866±0.00 N/A N/A 2.243±0.00 1.370±0.00 0.194±0.00 0.835±0.00 0.220±0.00 1.398±0.89 0.882±0.01 1.274±0.00
ENST00000374878 N/A N/A N/A N/A N/A N/A 0.811±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000437457 N/A N/A N/A N/A N/A N/A N/A 0.372±0.00 N/A N/A N/A N/A N/A N/A
ENST00000495564 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 N/A N/A N/A N/A
ENST00000623517 N/A N/A 0.984±0.00 N/A N/A 2.185±0.00 N/A N/A N/A N/A N/A 0.911±0.00 N/A N/A
ENST00000623566 N/A N/A N/A N/A N/A 6.714±0.00 4.292±0.00 N/A N/A 3.026±0.00 N/A 2.071±0.00 N/A N/A
ENST00000624210 N/A N/A 1.268±0.00 14.689±0.00 2.470±0.00 N/A 1.334±0.00 0.274±0.00 2.594±0.00 2.009±0.00 N/A 0.746±0.00 1.290±0.00 1.200±0.00
ENST00000624783 N/A 7.545±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624843 0.781±0.00 N/A N/A N/A N/A 1.782±0.00 N/A N/A 1.323±0.95 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RM CIL_0002RM_0001 CGP X:63347228-63809274
CIL_0003JJ CIL_0003JJ_0002 CGP X:63634967-64205744

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005829 TAS cytosol
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007268 TAS synaptic transmission
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0034220 TAS ion transmembrane transport
GO:0035023 IEA regulation of Rho protein signal transduction
GO:0043065 TAS positive regulation of apoptotic process
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0055085 TAS transmembrane transport
GO:0097190 TAS apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061746 arhgef9a Cdc42 guanine nucleotide exchange factor (GEF) 9a protein_coding Danio_rerio
ENSDARG00000076601 arhgef9b Cdc42 guanine nucleotide exchange factor (GEF) 9b protein_coding Danio_rerio
ENSDARG00000078624 arhgef9b Cdc42 guanine nucleotide exchange factor (GEF) 9b protein_coding Danio_rerio
ENSMUSG00000025656 Arhgef9 CDC42 guanine nucleotide exchange factor (GEF) 9 protein_coding Mus_musculus

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