C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003JJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061746-ENSDARG00000079624 CGP 7955 5:23723061-23802389
GeneTranscriptPositionBiotype
ENSDARG00000061746 (arhgef9a)
Cdc42 guanine nucleotide exchange factor (GEF) 9a 		ENSDART00000088408 (arhgef9a-201) 23724245-23754209 protein_coding
ENSDART00000134393 (arhgef9a-003) 23735209-23784331 protein_coding
ENSDART00000142199 (arhgef9a-002) 23726710-23735462 processed_transcript
ENSDART00000143878 (arhgef9a-001) 23723061-23784381 protein_coding
ENSDARG00000079624 (amer1)
APC membrane recruitment protein 1 		ENSDART00000113066 (amer1-201) 23797756-23802389 protein_coding

Danio rerio Ensembl (Zv9)

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Transcripts
Structures from Ensembl
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CIL_0003JJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000131089-ENSG00000184675 CGP 9606 X:63634967-64205744
GeneTranscriptPositionBiotype
ENSG00000131089 (ARHGEF9)
Cdc42 guanine nucleotide exchange factor (GEF) 9 		ENST00000253401 (ARHGEF9-001) 63634967-63755113 protein_coding
ENST00000374870 (ARHGEF9-013) 63634971-63755089 protein_coding
ENST00000374872 (ARHGEF9-004) 63637982-63755127 protein_coding
ENST00000374878 (ARHGEF9-002) 63634967-63785546 protein_coding
ENST00000437457 (ARHGEF9-008) 63636331-63785524 protein_coding
ENST00000466925 (ARHGEF9-006) 63637982-63674138 protein_coding
ENST00000495564 (ARHGEF9-003) 63637746-63755143 nonsense_mediated_decay
ENST00000498761 (ARHGEF9-005) 63637982-63644266 retained_intron
ENST00000623417 (ARHGEF9-019) 63678496-63809274 protein_coding
ENST00000623517 (ARHGEF9-007) 63637690-63785558 protein_coding
ENST00000623566 (ARHGEF9-016) 63697221-63755335 protein_coding
ENST00000623951 (ARHGEF9-015) 63754284-63755070 processed_transcript
ENST00000624210 (ARHGEF9-014) 63637840-63755078 protein_coding
ENST00000624355 (ARHGEF9-009) 63697276-63785215 protein_coding
ENST00000624387 (ARHGEF9-018) 63706263-63724975 processed_transcript
ENST00000624538 (ARHGEF9-017) 63724532-63755032 protein_coding
ENST00000624783 (ARHGEF9-020) 63637982-63657990 processed_transcript
ENST00000624843 (ARHGEF9-010) 63637985-63755063 protein_coding
ENST00000625116 (ARHGEF9-011) 63678504-63785215 protein_coding
ENSG00000184675 (AMER1)
APC membrane recruitment protein 1 		ENST00000330258 (AMER1-002) 64185117-64205744 protein_coding
ENST00000374869 (AMER1-001) 64185117-64205744 protein_coding
ENSG00000226010 (RP11-403E24.1)
 ENST00000454081 (RP11-403E24.1-001) 64144872-64147052 processed_pseudogene
ENSG00000231729 (ARHGEF9-IT1)
ARHGEF9 intronic transcript 1 (non-protein coding) 		ENST00000420917 (ARHGEF9-IT1-001) 63670196-63671502 sense_intronic
ENSG00000232794 (HNRNPDP1)
heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) pseudogene 1 		ENST00000439535 (HNRNPDP1-001) 64044305-64045058 processed_pseudogene
ENSG00000236813 (BTF3P8)
basic transcription factor 3 pseudogene 8 		ENST00000414577 (BTF3P8-001) 63766875-63767400 processed_pseudogene
CIL_0003JJ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025656-ENSMUSG00000050332 CGP 10090 X:95048935-95444872
GeneTranscriptPositionBiotype
ENSMUSG00000025656 (Arhgef9)
CDC42 guanine nucleotide exchange factor (GEF) 9 		ENSMUST00000113873 (Arhgef9-004) 95051926-95166307 protein_coding
ENSMUST00000113876 (Arhgef9-001) 95048935-95166361 protein_coding
ENSMUST00000113878 (Arhgef9-201) 95048944-95166486 protein_coding
ENSMUST00000113882 (Arhgef9-002) 95048944-95166486 protein_coding
ENSMUST00000113883 (Arhgef9-003) 95048939-95166406 protein_coding
ENSMUST00000113884 (Arhgef9-007) 95050266-95196821 protein_coding
ENSMUST00000113885 (Arhgef9-005) 95048938-95166373 protein_coding
ENSMUST00000128565 (Arhgef9-006) 95050266-95196821 nonsense_mediated_decay
ENSMUST00000181987 (Arhgef9-008) 95051919-95196505 protein_coding
ENSMUST00000182001 (Arhgef9-009) 95048944-95166474 protein_coding
ENSMUST00000182135 (Arhgef9-012) 95051919-95052792 processed_transcript
ENSMUST00000182137 (Arhgef9-011) 95051920-95058953 protein_coding
ENSMUST00000182562 (Arhgef9-010) 95101050-95166539 protein_coding
ENSMUSG00000050332 (Amer1)
APC membrane recruitment 1 		ENSMUST00000084535 (Amer1-001) 95420318-95444872 protein_coding
ENSMUSG00000080283 (Gm14806)
predicted gene 14806 		ENSMUST00000116606 (Gm14806-001) 95380371-95382480 processed_pseudogene
ENSMUSG00000080298 (Gm14807)
predicted gene 14807 		ENSMUST00000116640 (Gm14807-001) 95252916-95253898 processed_pseudogene
ENSMUSG00000082371 (Gm3712)
predicted gene 3712 		ENSMUST00000118523 (Gm3712-001) 95319819-95321889 processed_pseudogene
ENSMUSG00000083789 (Gm6092)
predicted gene 6092 		ENSMUST00000121659 (Gm6092-001) 95209773-95211801 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003JJ_0001ENSDARG00000061746ENSDART00000088408ENSDART00000134393ENSDART00000142199ENSDART00000143878ENSDARG00000079624ENSDART00000113066CIL_0003JJ_0002ENSG00000131089ENST00000253401ENST00000374870ENST00000374872ENST00000374878ENST00000437457ENST00000466925ENST00000495564ENST00000498761ENST00000623417ENST00000623517ENST00000623566ENST00000623951ENST00000624210ENST00000624355ENST00000624387ENST00000624538ENST00000624783ENST00000624843ENST00000625116ENSG00000184675ENST00000330258ENST00000374869ENSG00000226010ENST00000454081ENSG00000231729ENST00000420917ENSG00000232794ENST00000439535ENSG00000236813ENST00000414577CIL_0003JJ_0003ENSMUSG00000025656ENSMUST00000113873ENSMUST00000113876ENSMUST00000113878ENSMUST00000113882ENSMUST00000113883ENSMUST00000113884ENSMUST00000113885ENSMUST00000128565ENSMUST00000181987ENSMUST00000182001ENSMUST00000182135ENSMUST00000182137ENSMUST00000182562ENSMUSG00000050332ENSMUST00000084535ENSMUSG00000080283ENSMUST00000116606ENSMUSG00000080298ENSMUST00000116640ENSMUSG00000082371ENSMUST00000118523ENSMUSG00000083789ENSMUST00000121659
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003JJ_0001ENSDARG00000061746ENSDART00000088408ENSDART00000134393ENSDART00000143878ENSDARG00000079624ENSDART00000113066CIL_0003JJ_0002ENSG00000131089ENST00000253401ENST00000374870ENST00000374878ENST00000437457ENST00000495564ENST00000623517ENST00000623566ENST00000624210ENST00000624783ENST00000624843ENSG00000184675ENST00000330258ENST00000374869ENSG00000226010ENST00000454081ENSG00000231729ENST00000420917ENSG00000232794ENST00000439535ENSG00000236813ENST00000414577CIL_0003JJ_0003ENSMUSG00000025656ENSMUST00000113873ENSMUST00000113876ENSMUST00000113878ENSMUST00000113882ENSMUST00000113883ENSMUST00000113884ENSMUST00000113885ENSMUST00000128565ENSMUST00000181987ENSMUST00000182001ENSMUST00000182137ENSMUSG00000050332ENSMUST00000084535ENSMUSG00000080283ENSMUST00000116606ENSMUSG00000080298ENSMUST00000116640ENSMUSG00000082371ENSMUST00000118523ENSMUSG00000083789ENSMUST00000121659
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061746 ENSDART00000088408 N/A N/A N/A N/A N/A N/A 0.277±0.00 0.078±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000134393 N/A N/A N/A N/A N/A N/A 0.410±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143878 N/A N/A N/A 11.615±3.01 N/A N/A 0.121±0.00 N/A 0.027±0.00 N/A N/A N/A N/A N/A
ENSDARG00000079624 ENSDART00000113066 N/A N/A N/A 0.837±0.58 N/A N/A 1.848±0.59 0.265±0.00 0.612±0.00 N/A 2.353±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131089 ENST00000253401 1.034±0.00 N/A N/A 3.624±0.00 N/A N/A 0.454±0.00 N/A 0.892±0.73 N/A N/A 1.158±0.67 0.714±0.11 N/A
ENST00000374870 N/A 1.453±0.00 0.941±0.00 15.866±0.00 N/A N/A 2.243±0.00 1.370±0.00 0.194±0.00 0.835±0.00 0.220±0.00 1.398±0.89 0.882±0.01 1.274±0.00
ENST00000374872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000374878 N/A N/A N/A N/A N/A N/A 0.811±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000437457 N/A N/A N/A N/A N/A N/A N/A 0.372±0.00 N/A N/A N/A N/A N/A N/A
ENST00000466925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495564 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 N/A N/A N/A N/A
ENST00000498761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623517 N/A N/A 0.984±0.00 N/A N/A 2.185±0.00 N/A N/A N/A N/A N/A 0.911±0.00 N/A N/A
ENST00000623566 N/A N/A N/A N/A N/A 6.714±0.00 4.292±0.00 N/A N/A 3.026±0.00 N/A 2.071±0.00 N/A N/A
ENST00000623951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624210 N/A N/A 1.268±0.00 14.689±0.00 2.470±0.00 N/A 1.334±0.00 0.274±0.00 2.594±0.00 2.009±0.00 N/A 0.746±0.00 1.290±0.00 1.200±0.00
ENST00000624355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624783 N/A 7.545±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624843 0.781±0.00 N/A N/A N/A N/A 1.782±0.00 N/A N/A 1.323±0.95 N/A N/A N/A N/A N/A
ENST00000625116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000184675 ENST00000330258 0.564±0.00 0.651±0.00 0.413±0.00 0.436±0.10 0.557±0.04 0.458±0.04 0.565±0.23 1.111±0.07 0.582±0.27 0.430±0.08 0.540±0.25 1.428±0.99 0.394±0.13 0.522±0.37
ENST00000374869 N/A N/A N/A N/A N/A 0.185±0.00 N/A N/A 0.105±0.00 N/A 0.375±0.00 0.222±0.00 N/A N/A
ENSG00000226010 ENST00000454081 0.020±0.00 0.039±0.00 N/A 0.032±0.02 0.040±0.00 0.299±0.00 0.009±0.00 0.036±0.03 0.082±0.00 N/A N/A 0.233±0.20 N/A N/A
ENSG00000231729 ENST00000420917 N/A 0.034±0.00 N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A 0.088±0.00
ENSG00000232794 ENST00000439535 N/A 0.087±0.00 N/A 0.017±0.00 0.360±0.00 0.016±0.00 0.016±0.00 N/A N/A N/A N/A 0.041±0.00 0.021±0.00 0.021±0.00
ENSG00000236813 ENST00000414577 N/A 0.023±0.00 0.234±0.00 N/A 0.023±0.00 N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025656 ENSMUST00000113873 1.191±0.11 N/A N/A 31.135±0.00 0.870±0.34 N/A N/A 0.560±0.15 0.311±0.08 N/A N/A 1.533±0.00 0.145±0.06 N/A
ENSMUST00000113876 1.050±0.36 N/A 0.834±0.05 3.958±2.22 0.675±0.11 N/A 0.898±0.11 0.462±0.09 0.245±0.16 0.281±0.00 1.081±0.59 0.874±0.00 0.037±0.00 0.091±0.02
ENSMUST00000113878 N/A 0.333±0.00 N/A N/A 0.334±0.00 N/A N/A N/A N/A N/A 0.450±0.00 N/A N/A N/A
ENSMUST00000113882 N/A 0.413±0.05 N/A N/A 0.377±0.05 N/A N/A 0.568±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000113883 0.600±0.24 0.638±0.00 2.175±0.18 2.823±0.11 0.897±0.42 0.456±0.00 1.033±0.32 0.276±0.11 0.165±0.04 0.866±0.05 0.515±0.00 0.789±0.27 0.071±0.03 0.047±0.00
ENSMUST00000113884 N/A 0.470±0.12 N/A 14.361±0.00 0.311±0.00 0.488±0.08 N/A N/A N/A 0.296±0.00 N/A 0.693±0.13 0.116±0.02 0.062±0.02
ENSMUST00000113885 N/A N/A N/A N/A 0.538±0.00 N/A 0.712±0.00 0.149±0.00 0.131±0.00 N/A 0.691±0.13 0.429±0.00 0.046±0.00 0.068±0.03
ENSMUST00000128565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00
ENSMUST00000181987 N/A N/A 1.325±0.13 4.967±0.13 0.331±0.00 N/A N/A N/A 0.247±0.13 0.378±0.00 N/A 0.500±0.10 0.086±0.04 0.055±0.00
ENSMUST00000182001 0.411±0.00 N/A N/A 7.209±2.67 0.306±0.00 N/A N/A N/A 0.341±0.23 N/A N/A 0.583±0.15 N/A 0.022±0.00
ENSMUST00000182135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.513±0.01 N/A
ENSMUST00000182562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000050332 ENSMUST00000084535 4.319±1.00 2.016±0.21 3.690±0.05 2.519±1.39 2.458±0.26 1.314±0.20 0.842±0.12 1.040±0.09 0.942±0.25 2.739±0.19 1.147±0.68 3.032±0.82 1.126±0.44 0.372±0.13
ENSMUSG00000080283 ENSMUST00000116606 N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A
ENSMUSG00000080298 ENSMUST00000116640 N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A
ENSMUSG00000082371 ENSMUST00000118523 N/A N/A 0.011±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A 0.029±0.00
ENSMUSG00000083789 ENSMUST00000121659 0.014±0.00 0.399±0.31 0.008±0.00 0.008±0.00 0.035±0.02 0.035±0.00 0.024±0.00 0.026±0.01 0.089±0.11 0.073±0.00 N/A 0.248±0.19 0.012±0.00 0.062±0.02

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