C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002RM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000186767-ENSG00000131089 CGP 9606 X:63347228-63809274
GeneTranscriptPositionBiotype
ENSG00000131089 (ARHGEF9)
Cdc42 guanine nucleotide exchange factor (GEF) 9 		ENST00000253401 (ARHGEF9-001) 63634967-63755113 protein_coding
ENST00000374870 (ARHGEF9-013) 63634971-63755089 protein_coding
ENST00000374872 (ARHGEF9-004) 63637982-63755127 protein_coding
ENST00000374878 (ARHGEF9-002) 63634967-63785546 protein_coding
ENST00000437457 (ARHGEF9-008) 63636331-63785524 protein_coding
ENST00000466925 (ARHGEF9-006) 63637982-63674138 protein_coding
ENST00000495564 (ARHGEF9-003) 63637746-63755143 nonsense_mediated_decay
ENST00000498761 (ARHGEF9-005) 63637982-63644266 retained_intron
ENST00000623417 (ARHGEF9-019) 63678496-63809274 protein_coding
ENST00000623517 (ARHGEF9-007) 63637690-63785558 protein_coding
ENST00000623566 (ARHGEF9-016) 63697221-63755335 protein_coding
ENST00000623951 (ARHGEF9-015) 63754284-63755070 processed_transcript
ENST00000624210 (ARHGEF9-014) 63637840-63755078 protein_coding
ENST00000624355 (ARHGEF9-009) 63697276-63785215 protein_coding
ENST00000624387 (ARHGEF9-018) 63706263-63724975 processed_transcript
ENST00000624538 (ARHGEF9-017) 63724532-63755032 protein_coding
ENST00000624783 (ARHGEF9-020) 63637982-63657990 processed_transcript
ENST00000624843 (ARHGEF9-010) 63637985-63755063 protein_coding
ENST00000625116 (ARHGEF9-011) 63678504-63785215 protein_coding
ENSG00000186767 (SPIN4)
spindlin family, member 4 		ENST00000335144 (SPIN4-201) 63347228-63351339 protein_coding
ENST00000374884 (SPIN4-001) 63347228-63351344 protein_coding
ENSG00000231729 (ARHGEF9-IT1)
ARHGEF9 intronic transcript 1 (non-protein coding) 		ENST00000420917 (ARHGEF9-IT1-001) 63670196-63671502 sense_intronic
ENSG00000233661 (SPIN4-AS1)
SPIN4 antisense RNA 1 		ENST00000451979 (SPIN4-AS1-001) 63349646-63352178 antisense
ENSG00000235437 (LINC01278)
long intergenic non-protein coding RNA 1278 		ENST00000433061 (LINC01278-001) 63509942-63561049 sense_overlapping
ENST00000608623 (LINC01278-004) 63426560-63431612 retained_intron
ENST00000608788 (LINC01278-007) 63399404-63561023 sense_overlapping
ENST00000609143 (LINC01278-002) 63426560-63561049 sense_overlapping
ENST00000609401 (LINC01278-003) 63426559-63560993 sense_overlapping
ENST00000610088 (LINC01278-005) 63343227-63561071 sense_overlapping
ENST00000610234 (LINC01278-006) 63345489-63561052 sense_overlapping
ENSG00000236813 (BTF3P8)
basic transcription factor 3 pseudogene 8 		ENST00000414577 (BTF3P8-001) 63766875-63767400 processed_pseudogene
CIL_0002RM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000071722-ENSMUSG00000025656 CGP 10090 X:95022510-95196821
GeneTranscriptPositionBiotype
ENSMUSG00000025656 (Arhgef9)
CDC42 guanine nucleotide exchange factor (GEF) 9 		ENSMUST00000113873 (Arhgef9-004) 95051926-95166307 protein_coding
ENSMUST00000113876 (Arhgef9-001) 95048935-95166361 protein_coding
ENSMUST00000113878 (Arhgef9-201) 95048944-95166486 protein_coding
ENSMUST00000113882 (Arhgef9-002) 95048944-95166486 protein_coding
ENSMUST00000113883 (Arhgef9-003) 95048939-95166406 protein_coding
ENSMUST00000113884 (Arhgef9-007) 95050266-95196821 protein_coding
ENSMUST00000113885 (Arhgef9-005) 95048938-95166373 protein_coding
ENSMUST00000128565 (Arhgef9-006) 95050266-95196821 nonsense_mediated_decay
ENSMUST00000181987 (Arhgef9-008) 95051919-95196505 protein_coding
ENSMUST00000182001 (Arhgef9-009) 95048944-95166474 protein_coding
ENSMUST00000182135 (Arhgef9-012) 95051919-95052792 processed_transcript
ENSMUST00000182137 (Arhgef9-011) 95051920-95058953 protein_coding
ENSMUST00000182562 (Arhgef9-010) 95101050-95166539 protein_coding
ENSMUSG00000071722 (Spin4)
spindlin family, member 4 		ENSMUST00000096367 (Spin4-001) 95022510-95026682 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002RM_0001ENSG00000131089ENST00000253401ENST00000374870ENST00000374872ENST00000374878ENST00000437457ENST00000466925ENST00000495564ENST00000498761ENST00000623417ENST00000623517ENST00000623566ENST00000623951ENST00000624210ENST00000624355ENST00000624387ENST00000624538ENST00000624783ENST00000624843ENST00000625116ENSG00000186767ENST00000335144ENST00000374884ENSG00000231729ENST00000420917ENSG00000233661ENST00000451979ENSG00000235437ENST00000433061ENST00000608623ENST00000608788ENST00000609143ENST00000609401ENST00000610088ENST00000610234ENSG00000236813ENST00000414577CIL_0002RM_0002ENSMUSG00000025656ENSMUST00000113873ENSMUST00000113876ENSMUST00000113878ENSMUST00000113882ENSMUST00000113883ENSMUST00000113884ENSMUST00000113885ENSMUST00000128565ENSMUST00000181987ENSMUST00000182001ENSMUST00000182135ENSMUST00000182137ENSMUST00000182562ENSMUSG00000071722ENSMUST00000096367
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002RM_0001ENSG00000131089ENST00000253401ENST00000374870ENST00000374878ENST00000437457ENST00000495564ENST00000623517ENST00000623566ENST00000624210ENST00000624783ENST00000624843ENSG00000186767ENST00000335144ENST00000374884ENSG00000231729ENST00000420917ENSG00000233661ENST00000451979ENSG00000235437ENST00000433061ENST00000608623ENST00000608788ENST00000609143ENST00000609401ENST00000610234ENSG00000236813ENST00000414577CIL_0002RM_0002ENSMUSG00000025656ENSMUST00000113873ENSMUST00000113876ENSMUST00000113878ENSMUST00000113882ENSMUST00000113883ENSMUST00000113884ENSMUST00000113885ENSMUST00000128565ENSMUST00000181987ENSMUST00000182001ENSMUST00000182137ENSMUSG00000071722ENSMUST00000096367
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131089 ENST00000253401 1.034±0.00 N/A N/A 3.624±0.00 N/A N/A 0.454±0.00 N/A 0.892±0.73 N/A N/A 1.158±0.67 0.714±0.11 N/A
ENST00000374870 N/A 1.453±0.00 0.941±0.00 15.866±0.00 N/A N/A 2.243±0.00 1.370±0.00 0.194±0.00 0.835±0.00 0.220±0.00 1.398±0.89 0.882±0.01 1.274±0.00
ENST00000374872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000374878 N/A N/A N/A N/A N/A N/A 0.811±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000437457 N/A N/A N/A N/A N/A N/A N/A 0.372±0.00 N/A N/A N/A N/A N/A N/A
ENST00000466925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495564 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 N/A N/A N/A N/A
ENST00000498761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623517 N/A N/A 0.984±0.00 N/A N/A 2.185±0.00 N/A N/A N/A N/A N/A 0.911±0.00 N/A N/A
ENST00000623566 N/A N/A N/A N/A N/A 6.714±0.00 4.292±0.00 N/A N/A 3.026±0.00 N/A 2.071±0.00 N/A N/A
ENST00000623951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624210 N/A N/A 1.268±0.00 14.689±0.00 2.470±0.00 N/A 1.334±0.00 0.274±0.00 2.594±0.00 2.009±0.00 N/A 0.746±0.00 1.290±0.00 1.200±0.00
ENST00000624355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624783 N/A 7.545±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624843 0.781±0.00 N/A N/A N/A N/A 1.782±0.00 N/A N/A 1.323±0.95 N/A N/A N/A N/A N/A
ENST00000625116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000186767 ENST00000335144 N/A 0.741±0.00 0.029±0.00 0.492±0.17 0.453±0.06 0.476±0.06 0.088±0.01 0.273±0.22 0.330±0.23 1.150±0.78 0.041±0.01 0.340±0.20 1.325±1.15 0.471±0.20
ENST00000374884 0.737±0.00 0.741±0.00 0.029±0.00 0.326±0.00 0.452±0.06 0.475±0.06 0.088±0.01 0.273±0.22 0.326±0.23 0.373±0.00 0.041±0.01 0.620±0.52 0.513±0.10 0.470±0.20
ENSG00000231729 ENST00000420917 N/A 0.034±0.00 N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A 0.088±0.00
ENSG00000233661 ENST00000451979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.681±0.00 N/A N/A
ENSG00000235437 ENST00000433061 N/A N/A N/A 2.164±0.00 2.478±0.00 N/A 1.448±0.00 N/A N/A N/A N/A 0.226±0.00 N/A 0.965±0.00
ENST00000608623 0.557±0.00 1.145±0.00 N/A 0.615±0.00 0.518±0.02 0.632±0.37 0.695±0.00 0.555±0.47 0.524±0.00 1.504±0.00 0.609±0.00 0.942±0.55 N/A 0.527±0.01
ENST00000608788 N/A N/A N/A N/A N/A 1.923±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609143 4.810±0.00 6.494±0.00 7.160±0.00 2.931±0.37 4.653±0.00 5.605±4.35 4.959±0.00 2.664±1.97 2.742±0.13 3.881±2.64 3.988±1.60 4.034±3.31 7.022±2.68 3.025±2.13
ENST00000609401 N/A N/A 1.360±0.00 1.822±0.00 1.081±0.00 2.847±0.00 0.543±0.32 1.437±0.00 N/A 0.807±0.00 N/A 2.829±0.00 1.949±0.34 1.734±0.00
ENST00000610088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610234 N/A N/A N/A 2.435±0.00 N/A N/A 0.967±0.00 N/A N/A N/A N/A N/A N/A 1.350±0.00
ENSG00000236813 ENST00000414577 N/A 0.023±0.00 0.234±0.00 N/A 0.023±0.00 N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025656 ENSMUST00000113873 1.191±0.11 N/A N/A 31.135±0.00 0.870±0.34 N/A N/A 0.560±0.15 0.311±0.08 N/A N/A 1.533±0.00 0.145±0.06 N/A
ENSMUST00000113876 1.050±0.36 N/A 0.834±0.05 3.958±2.22 0.675±0.11 N/A 0.898±0.11 0.462±0.09 0.245±0.16 0.281±0.00 1.081±0.59 0.874±0.00 0.037±0.00 0.091±0.02
ENSMUST00000113878 N/A 0.333±0.00 N/A N/A 0.334±0.00 N/A N/A N/A N/A N/A 0.450±0.00 N/A N/A N/A
ENSMUST00000113882 N/A 0.413±0.05 N/A N/A 0.377±0.05 N/A N/A 0.568±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000113883 0.600±0.24 0.638±0.00 2.175±0.18 2.823±0.11 0.897±0.42 0.456±0.00 1.033±0.32 0.276±0.11 0.165±0.04 0.866±0.05 0.515±0.00 0.789±0.27 0.071±0.03 0.047±0.00
ENSMUST00000113884 N/A 0.470±0.12 N/A 14.361±0.00 0.311±0.00 0.488±0.08 N/A N/A N/A 0.296±0.00 N/A 0.693±0.13 0.116±0.02 0.062±0.02
ENSMUST00000113885 N/A N/A N/A N/A 0.538±0.00 N/A 0.712±0.00 0.149±0.00 0.131±0.00 N/A 0.691±0.13 0.429±0.00 0.046±0.00 0.068±0.03
ENSMUST00000128565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00
ENSMUST00000181987 N/A N/A 1.325±0.13 4.967±0.13 0.331±0.00 N/A N/A N/A 0.247±0.13 0.378±0.00 N/A 0.500±0.10 0.086±0.04 0.055±0.00
ENSMUST00000182001 0.411±0.00 N/A N/A 7.209±2.67 0.306±0.00 N/A N/A N/A 0.341±0.23 N/A N/A 0.583±0.15 N/A 0.022±0.00
ENSMUST00000182135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.513±0.01 N/A
ENSMUST00000182562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000071722 ENSMUST00000096367 1.326±0.78 1.224±0.31 2.273±0.16 0.559±0.35 0.842±0.47 0.606±0.18 0.259±0.05 0.287±0.06 0.251±0.15 1.435±0.21 0.062±0.03 2.636±1.25 0.835±0.24 0.093±0.06

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