C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000253754 PDLIM4-001 ENSG00000131435 9606 + 5:132257671-132273454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000253754
Transcript ID Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000253754 0.755±0.00 3.953±0.00 0.260±0.07 1.245±0.00 1.400±1.24 0.039±0.00 4.405±2.18 1.769±0.24 0.673±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093D CIL_00093D_0001 VISTA 5:131965137-132566411
CIL_0007RF CIL_0007RF_0001 VISTA 5:131967147-132570227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018755 Pdlim4-001 protein_coding Mus_musculus 0 1109
ENSMUST00000093109 Pdlim4-003 protein_coding Mus_musculus 0 691
ENSMUST00000144477 Pdlim4-005 protein_coding Mus_musculus 0 420
ENSMUST00000127271 Pdlim4-002 retained_intron Mus_musculus 0 416

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