C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379018 PDLIM4-002 ENSG00000131435 9606 + 5:132257707-132272332 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379018
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379018 6.702±0.00 19.801±0.00 15.606±0.00 21.670±0.00 29.583±0.00 3.430±0.00 6.531±0.00 0.102±0.00 23.933±0.00 2.078±0.00 12.820±8.08 17.945±6.48 8.447±4.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093D CIL_00093D_0001 VISTA 5:131965137-132566411
CIL_0007RF CIL_0007RF_0001 VISTA 5:131967147-132570227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093109 Pdlim4-003 protein_coding Mus_musculus 0 920
ENSMUST00000018755 Pdlim4-001 protein_coding Mus_musculus 0 719
ENSMUST00000144477 Pdlim4-005 protein_coding Mus_musculus 0 420
ENSMUST00000127271 Pdlim4-002 retained_intron Mus_musculus 0 394

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