C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PSMC3 interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393795 PSMC3IP-002 ENSG00000131470 9606 - 17:42572315-42577795 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000393795
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000393795 9.027±0.00 1.828±0.00 4.964±0.00 3.949±0.00 5.335±0.00 2.652±1.40 3.997±0.00 18.803±0.00 6.512±3.55 5.674±2.31 11.637±1.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004GR CIL_0004GR_0001 CGP 17:42561467-42573239
CIL_00045X CIL_00045X_0001 CGP 17:42567068-42577831
CIL_00045R CIL_00045R_0001 CGP 17:42572315-42610623

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006310 IEA DNA recombination
GO:0030374 IMP ligand-dependent nuclear receptor transcription coactivator activity
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0051321 IEA meiotic cell cycle
GO:2001141 IMP regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019447 Psmc3ip-001 protein_coding Mus_musculus 0 800
ENSMUST00000126386 Psmc3ip-002 retained_intron Mus_musculus 0 725
ENSMUST00000142545 Psmc3ip-004 nonsense_mediated_decay Mus_musculus 0 604
ENSMUST00000134520 Psmc3ip-003 retained_intron Mus_musculus 0 440

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