C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131626 PPFIA1 9606 + 11:70270700-70384403 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000253925 PPFIA1-001 70270700-70384400 protein_coding
  ENST00000389547 PPFIA1-002 70270717-70378580 protein_coding
  ENST00000525530 PPFIA1-011 70329893-70332046 retained_intron
  ENST00000525922 PPFIA1-025 70367506-70372534 nonsense_mediated_decay
  ENST00000526074 PPFIA1-020 70341007-70355736 processed_transcript
  ENST00000526262 PPFIA1-004 70326344-70384403 nonsense_mediated_decay
  ENST00000526347 PPFIA1-016 70340977-70355741 nonsense_mediated_decay
  ENST00000526369 PPFIA1-014 70337397-70348300 nonsense_mediated_decay
  ENST00000527612 PPFIA1-022 70354203-70362175 retained_intron
  ENST00000528284 PPFIA1-015 70341873-70348261 processed_transcript
  ENST00000528750 PPFIA1-018 70343751-70362463 protein_coding
  ENST00000528853 PPFIA1-023 70378078-70383629 protein_coding
  ENST00000530294 PPFIA1-017 70340996-70356254 nonsense_mediated_decay
  ENST00000530390 PPFIA1-021 70348375-70362472 nonsense_mediated_decay
  ENST00000530548 PPFIA1-006 70364342-70384394 processed_transcript
  ENST00000530746 PPFIA1-008 70271220-70324955 protein_coding
  ENST00000530798 PPFIA1-013 70335613-70356205 protein_coding
  ENST00000530932 PPFIA1-010 70327554-70335571 processed_transcript
  ENST00000531657 PPFIA1-007 70371327-70384394 retained_intron
  ENST00000532024 PPFIA1-009 70271907-70324434 protein_coding
  ENST00000532443 PPFIA1-012 70334352-70339201 processed_transcript
  ENST00000532504 PPFIA1-003 70270773-70384387 nonsense_mediated_decay
  ENST00000532793 PPFIA1-024 70362135-70362795 retained_intron
  ENST00000533894 PPFIA1-019 70345915-70355712 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253925ENST00000389547ENST00000526262ENST00000530548ENST00000532504
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253925 6.831±0.00 7.384±0.00 3.241±0.00 N/A 6.618±1.47 5.990±0.00 3.829±1.55 8.225±4.53 2.779±0.08 5.057±1.73 2.141±1.48 8.667±2.74 9.199±5.04 16.522±0.00
ENST00000389547 N/A N/A N/A 2.444±0.00 4.952±0.00 4.549±0.00 N/A N/A N/A 4.970±0.00 N/A 3.144±0.00 N/A 29.637±0.00
ENST00000526262 N/A N/A N/A N/A N/A N/A N/A N/A 2.314±0.00 N/A N/A N/A N/A N/A
ENST00000530548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.187±0.00 N/A N/A N/A
ENST00000532504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.019±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 TAS signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005925 IDA focal adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0048786 IEA:TAS presynaptic active zone
GO:0051497 IMP negative regulation of stress fiber assembly
GO:0090005 IMP negative regulation of establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060357 PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 protein_coding Danio_rerio
ENSMUSG00000037519 Ppfia1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 protein_coding Mus_musculus

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