C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037519 Ppfia1 10090 - 7:144476758-144553729 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000168134 Ppfia1-003 144476758-144553729 protein_coding
  ENSMUST00000182226 Ppfia1-002 144476978-144552537 protein_coding
  ENSMUST00000182731 Ppfia1-007 144519258-144552362 nonsense_mediated_decay
  ENSMUST00000182958 Ppfia1-004 144476766-144513274 nonsense_mediated_decay
  ENSMUST00000182982 Ppfia1-005 144476759-144489337 retained_intron
  ENSMUST00000183063 Ppfia1-010 144482427-144486769 processed_transcript
  ENSMUST00000183106 Ppfia1-006 144520283-144524370 retained_intron
  ENSMUST00000183183 Ppfia1-008 144506212-144508973 retained_intron
  ENSMUST00000183197 Ppfia1-009 144498786-144500562 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168134ENSMUST00000182226ENSMUST00000182731ENSMUST00000182958ENSMUST00000182982
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168134 N/A 2.820±0.00 N/A 6.380±3.19 2.528±0.15 N/A 1.048±0.00 N/A N/A 3.271±0.00 1.514±0.60 N/A N/A 1.919±0.03
ENSMUST00000182226 N/A N/A N/A 9.024±0.00 N/A N/A N/A N/A N/A N/A 1.029±0.10 8.196±5.99 N/A N/A
ENSMUST00000182731 N/A N/A N/A 27.158±0.00 N/A N/A N/A N/A N/A N/A N/A 71.125±0.00 125.273±16.44 N/A
ENSMUST00000182958 10.128±1.04 19.590±1.44 3.672±0.00 7.276±1.27 12.878±5.00 12.636±1.18 3.924±1.50 13.179±2.36 5.979±2.57 15.118±1.86 1.274±0.00 18.780±6.85 6.485±2.44 5.375±0.66
ENSMUST00000182982 N/A 11.575±3.07 N/A N/A N/A N/A 2.821±0.20 N/A 2.747±0.00 N/A 2.288±0.02 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0048786 IEA presynaptic active zone
GO:0051497 IDA negative regulation of stress fiber assembly
GO:0090005 IEA negative regulation of establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060357 PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 protein_coding Danio_rerio
ENSG00000131626 PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 protein_coding Homo_sapiens

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