C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000253925 PPFIA1-001 ENSG00000131626 9606 + 11:70270700-70384400 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253925
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253925 6.831±0.00 7.384±0.00 3.241±0.00 6.618±1.47 5.990±0.00 3.829±1.55 8.225±4.53 2.779±0.08 5.057±1.73 2.141±1.48 8.667±2.74 9.199±5.04 16.522±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 TAS signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005925 IDA focal adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0048786 IEA:TAS presynaptic active zone
GO:0051497 IMP negative regulation of stress fiber assembly
GO:0090005 IMP negative regulation of establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182958 Ppfia1-004 nonsense_mediated_decay Mus_musculus 0 2440
ENSMUST00000168134 Ppfia1-003 protein_coding Mus_musculus 0 2209
ENSMUST00000182226 Ppfia1-002 protein_coding Mus_musculus 0 1264
ENSMUST00000182982 Ppfia1-005 retained_intron Mus_musculus 0 811
ENSMUST00000182731 Ppfia1-007 nonsense_mediated_decay Mus_musculus 0 407
ENSMUST00000183063 Ppfia1-010 processed_transcript Mus_musculus 0 398
ENSMUST00000183197 Ppfia1-009 retained_intron Mus_musculus 0 292

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