C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389547 PPFIA1-002 ENSG00000131626 9606 + 11:70270717-70378580 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLungOvaryTestisENST00000389547
Transcript ID Brain Breast Colon Lung Ovary Testis
ENST00000389547 2.444±0.00 4.952±0.00 4.549±0.00 4.970±0.00 3.144±0.00 29.637±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 TAS signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005925 IDA focal adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0048786 IEA:TAS presynaptic active zone
GO:0051497 IMP negative regulation of stress fiber assembly
GO:0090005 IMP negative regulation of establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182958 Ppfia1-004 nonsense_mediated_decay Mus_musculus 0 2324
ENSMUST00000168134 Ppfia1-003 protein_coding Mus_musculus 0 2209
ENSMUST00000182226 Ppfia1-002 protein_coding Mus_musculus 0 1264
ENSMUST00000182982 Ppfia1-005 retained_intron Mus_musculus 0 811
ENSMUST00000182731 Ppfia1-007 nonsense_mediated_decay Mus_musculus 0 407
ENSMUST00000183063 Ppfia1-010 processed_transcript Mus_musculus 0 398
ENSMUST00000183197 Ppfia1-009 retained_intron Mus_musculus 0 292

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