C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: StAR-related lipid transfer (START) domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336308 STARD3-001 ENSG00000131748 9606 + 17:39637065-39663484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000336308
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000336308 6.121±0.00 9.891±0.00 8.502±0.00 6.761±0.00 4.600±0.00 2.065±0.00 4.489±0.00 5.852±0.00 6.978±0.00 14.711±8.34 19.101±7.95 10.585±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_00080Z CIL_00080Z_0001 VISTA 17:39318232-39918735
CIL_00098W CIL_00098W_0001 VISTA 17:39359510-39962707
CIL_0007WH CIL_0007WH_0001 VISTA 17:39374871-39978277
CIL_0000TI CIL_0000TI_0002 CGP 17:39626740-39663484
CIL_00023N CIL_00023N_0001 CGP 17:39637065-39666555

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 TAS cytoplasm
GO:0005739 IEA mitochondrion
GO:0005765 IDA lysosomal membrane
GO:0005768 IEA endosome
GO:0006629 TAS lipid metabolic process
GO:0006701 IEA progesterone biosynthetic process
GO:0006839 TAS mitochondrial transport
GO:0006869 IEA lipid transport
GO:0008202 TAS steroid metabolic process
GO:0008203 TAS cholesterol metabolic process
GO:0008289 IEA lipid binding
GO:0015485 IDA cholesterol binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018311 Stard3-001 protein_coding Mus_musculus 0 1784
ENSMUST00000154960 Stard3-002 processed_transcript Mus_musculus 0 1314
ENSMUST00000155063 Stard3-005 processed_transcript Mus_musculus 0 833
ENSMUST00000130323 Stard3-006 processed_transcript Mus_musculus 0 826
ENSMUST00000148738 Stard3-004 processed_transcript Mus_musculus 0 492
ENSMUST00000152559 Stard3-003 processed_transcript Mus_musculus 0 455

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