C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131951 LRRC9 9606 + 14:59919713-60063559 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254271 LRRC9-002 59919713-60063559 nonsense_mediated_decay
  ENST00000445360 LRRC9-001 59919713-60063559 protein_coding
  ENST00000454474 LRRC9-004 59919781-59959979 processed_transcript
  ENST00000562571 LRRC9-006 60003637-60006748 retained_intron
  ENST00000568404 LRRC9-003 60028056-60063406 nonsense_mediated_decay
  ENST00000570145 LRRC9-005 59920149-59930992 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000254271ENST00000445360ENST00000454474ENST00000562571ENST00000568404ENST00000570145
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000254271 N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 0.334±0.00
ENST00000445360 N/A N/A 0.009±0.00 0.013±0.00 0.012±0.00 0.002±0.00 0.020±0.02 N/A 0.014±0.01 1.095±0.00
ENST00000454474 N/A N/A N/A 0.098±0.00 N/A N/A N/A 0.191±0.00 N/A N/A
ENST00000562571 N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A 0.369±0.31 N/A
ENST00000568404 0.014±0.00 N/A N/A N/A 0.037±0.02 0.054±0.00 N/A 0.216±0.14 N/A N/A
ENST00000570145 N/A 0.350±0.00 N/A N/A N/A N/A N/A 0.158±0.00 0.184±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZY CIL_0005ZY_0002 CGP 14:59595976-60063559
CIL_000606 CIL_000606_0002 CGP 14:59919713-60169133

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054352 lrrc9 leucine rich repeat containing 9 protein_coding Danio_rerio
ENSMUSG00000021090 Lrrc9 leucine rich repeat containing 9 protein_coding Mus_musculus

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