C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000606_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000054352-ENSDARG00000060785 CGP 7955 13:31696792-31759110
GeneTranscriptPositionBiotype
ENSDARG00000054352 (lrrc9)
leucine rich repeat containing 9 		ENSDART00000076533 (lrrc9-201) 31697490-31720809 protein_coding
ENSDART00000114995 (lrrc9-202) 31697490-31720809 protein_coding
ENSDART00000141217 (lrrc9-003) 31696792-31703403 protein_coding
ENSDART00000146752 (lrrc9-002) 31720838-31737752 protein_coding
ENSDART00000148112 (lrrc9-001) 31703416-31717889 protein_coding
ENSDARG00000060785 (pcnxl4)
pecanex-like 4 (Drosophila) 		ENSDART00000086018 (pcnxl4-001) 31744139-31759110 protein_coding
ENSDART00000138720 (pcnxl4-002) 31755033-31756037 retained_intron
CIL_000606_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000131951-ENSG00000126773 CGP 9606 14:59919713-60169133
GeneTranscriptPositionBiotype
ENSG00000126773 (PCNXL4)
pecanex-like 4 (Drosophila) 		ENST00000317623 (PCNXL4-003) 60091911-60148221 protein_coding
ENST00000391611 (PCNXL4-004) 60091919-60111157 protein_coding
ENST00000406854 (PCNXL4-005) 60091919-60134814 protein_coding
ENST00000406949 (PCNXL4-001) 60091927-60169133 protein_coding
ENST00000483571 (PCNXL4-002) 60115344-60126190 retained_intron
ENST00000553513 (PCNXL4-008) 60115621-60118549 retained_intron
ENST00000553898 (PCNXL4-013) 60147325-60169131 processed_transcript
ENST00000554534 (PCNXL4-012) 60115982-60124273 protein_coding
ENST00000555569 (PCNXL4-007) 60092186-60114980 retained_intron
ENST00000555740 (PCNXL4-006) 60118443-60134809 nonsense_mediated_decay
ENST00000555929 (PCNXL4-010) 60118624-60134227 nonsense_mediated_decay
ENST00000556360 (PCNXL4-011) 60124306-60134085 nonsense_mediated_decay
ENST00000556907 (PCNXL4-009) 60091977-60115770 processed_transcript
ENSG00000131951 (LRRC9)
leucine rich repeat containing 9 		ENST00000254271 (LRRC9-002) 59919713-60063559 nonsense_mediated_decay
ENST00000445360 (LRRC9-001) 59919713-60063559 protein_coding
ENST00000454474 (LRRC9-004) 59919781-59959979 processed_transcript
ENST00000562571 (LRRC9-006) 60003637-60006748 retained_intron
ENST00000568404 (LRRC9-003) 60028056-60063406 nonsense_mediated_decay
ENST00000570145 (LRRC9-005) 59920149-59930992 protein_coding
ENSG00000258553 (RP11-16B13.1)
 ENST00000554123 (RP11-16B13.1-001) 59969116-60091783 antisense
ENST00000555432 (RP11-16B13.1-002) 59969116-60057651 antisense
ENSG00000258896 (SCOCP1)
short coiled-coil protein pseudogene 1 		ENST00000554676 (SCOCP1-001) 60158976-60159324 processed_pseudogene
ENSG00000261120 (RP11-62H20.1)
 ENST00000565968 (RP11-62H20.1-001) 59919423-59920339 antisense
CIL_000606_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021090-ENSMUSG00000034501 CGP 10090 12:72441866-72580213
GeneTranscriptPositionBiotype
ENSMUSG00000021090 (Lrrc9)
leucine rich repeat containing 9 		ENSMUST00000160394 (Lrrc9-004) 72442242-72454766 retained_intron
ENSMUST00000161195 (Lrrc9-006) 72442035-72514334 processed_transcript
ENSMUST00000161284 (Lrrc9-002) 72441933-72497239 protein_coding
ENSMUST00000161547 (Lrrc9-007) 72476074-72477661 retained_intron
ENSMUST00000161957 (Lrrc9-005) 72442249-72474210 retained_intron
ENSMUST00000162159 (Lrrc9-001) 72441866-72510565 protein_coding
ENSMUST00000162179 (Lrrc9-003) 72441949-72467526 retained_intron
ENSMUSG00000034501 (Pcnxl4)
pecanex-like 4 (Drosophila) 		ENSMUST00000044352 (Pcnxl4-201) 72536357-72580213 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000606_0001ENSDARG00000054352ENSDART00000076533ENSDART00000114995ENSDART00000141217ENSDART00000146752ENSDART00000148112ENSDARG00000060785ENSDART00000086018ENSDART00000138720CIL_000606_0002ENSG00000126773ENST00000317623ENST00000391611ENST00000406854ENST00000406949ENST00000483571ENST00000553513ENST00000553898ENST00000554534ENST00000555569ENST00000555740ENST00000555929ENST00000556360ENST00000556907ENSG00000131951ENST00000254271ENST00000445360ENST00000454474ENST00000562571ENST00000568404ENST00000570145ENSG00000258553ENST00000554123ENST00000555432ENSG00000258896ENST00000554676ENSG00000261120ENST00000565968CIL_000606_0003ENSMUSG00000021090ENSMUST00000160394ENSMUST00000161195ENSMUST00000161284ENSMUST00000161547ENSMUST00000161957ENSMUST00000162159ENSMUST00000162179ENSMUSG00000034501ENSMUST00000044352
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000606_0001ENSDARG00000054352ENSDART00000076533ENSDART00000114995ENSDART00000141217ENSDART00000146752ENSDART00000148112ENSDARG00000060785ENSDART00000086018CIL_000606_0002ENSG00000126773ENST00000317623ENST00000391611ENST00000406854ENST00000406949ENST00000555740ENSG00000131951ENST00000254271ENST00000445360ENST00000454474ENST00000562571ENST00000568404ENST00000570145ENSG00000258553ENST00000554123ENST00000555432ENSG00000258896ENST00000554676ENSG00000261120ENST00000565968CIL_000606_0003ENSMUSG00000021090ENSMUST00000160394ENSMUST00000161195ENSMUST00000161284ENSMUST00000161547ENSMUST00000161957ENSMUST00000162159ENSMUST00000162179ENSMUSG00000034501ENSMUST00000044352
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000054352 ENSDART00000076533 N/A N/A N/A 0.075±0.03 N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000114995 N/A N/A N/A N/A N/A N/A 0.062±0.01 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141217 N/A N/A N/A 0.117±0.06 N/A N/A N/A N/A 0.081±0.00 N/A N/A N/A N/A N/A
ENSDART00000146752 N/A N/A N/A 0.426±0.23 N/A N/A 0.468±0.12 N/A 0.059±0.00 N/A 0.048±0.00 N/A N/A N/A
ENSDART00000148112 N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A 0.142±0.00 N/A N/A N/A
ENSDARG00000060785 ENSDART00000086018 N/A N/A N/A 3.826±2.01 N/A N/A 2.618±0.00 N/A 0.342±0.00 N/A 1.197±0.00 N/A N/A N/A
ENSDART00000138720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000126773 ENST00000317623 N/A 1.124±0.00 N/A 0.838±0.06 N/A N/A 0.430±0.06 1.006±0.00 N/A N/A 2.833±0.00 1.103±0.00 0.767±0.00 0.790±0.27
ENST00000391611 N/A N/A N/A N/A 1.758±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406854 3.473±0.00 N/A N/A 3.992±0.00 2.734±0.48 3.709±0.00 2.877±0.64 4.248±0.00 4.351±0.00 2.927±0.00 N/A 5.837±1.07 2.853±0.20 5.983±1.02
ENST00000406949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.569±0.00 N/A N/A 4.905±0.00
ENST00000483571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.406±0.00 N/A 3.946±0.00
ENST00000555929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000131951 ENST00000254271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A 0.334±0.00
ENST00000445360 N/A N/A N/A N/A 0.009±0.00 0.013±0.00 0.012±0.00 0.002±0.00 0.020±0.02 N/A N/A 0.014±0.01 N/A 1.095±0.00
ENST00000454474 N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A 0.191±0.00 N/A N/A N/A N/A
ENST00000562571 N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A 0.369±0.31 N/A N/A
ENST00000568404 0.014±0.00 N/A N/A N/A N/A N/A 0.037±0.02 0.054±0.00 N/A 0.216±0.14 N/A N/A N/A N/A
ENST00000570145 N/A N/A N/A 0.350±0.00 N/A N/A N/A N/A N/A 0.158±0.00 N/A 0.184±0.00 N/A N/A
ENSG00000258553 ENST00000554123 N/A N/A N/A N/A N/A N/A N/A N/A 0.475±0.00 N/A N/A N/A N/A 0.649±0.18
ENST00000555432 N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A
ENSG00000258896 ENST00000554676 N/A 0.364±0.00 0.907±0.00 N/A 1.801±0.00 N/A 0.123±0.00 0.142±0.00 1.823±0.00 0.600±0.54 3.018±0.00 0.464±0.36 N/A 0.343±0.25
ENSG00000261120 ENST00000565968 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.282±0.00 N/A 0.152±0.01 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021090 ENSMUST00000160394 N/A 0.143±0.00 N/A N/A N/A N/A 0.036±0.00 N/A N/A 0.169±0.00 N/A N/A N/A N/A
ENSMUST00000161195 0.172±0.03 0.215±0.09 N/A 0.116±0.00 0.160±0.08 N/A 0.021±0.00 0.029±0.00 N/A 0.109±0.00 N/A 0.272±0.11 0.048±0.02 N/A
ENSMUST00000161284 0.086±0.00 0.265±0.16 0.009±0.00 0.194±0.00 0.176±0.08 0.042±0.01 N/A 0.013±0.00 0.026±0.01 0.091±0.00 0.032±0.00 0.210±0.07 0.072±0.00 20.005±10.58
ENSMUST00000161547 N/A 0.501±0.20 N/A N/A N/A N/A N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A
ENSMUST00000161957 N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A 0.013±0.00 N/A N/A N/A 0.039±0.02 N/A
ENSMUST00000162159 0.084±0.00 0.136±0.00 0.012±0.00 N/A 0.262±0.13 N/A 0.025±0.01 0.033±0.01 0.016±0.01 N/A 0.006±0.00 0.343±0.15 N/A 13.716±1.63
ENSMUST00000162179 N/A 0.065±0.00 N/A N/A N/A N/A 0.017±0.00 N/A 0.025±0.01 N/A 0.018±0.00 N/A 0.068±0.03 N/A
ENSMUSG00000034501 ENSMUST00000044352 2.787±0.75 2.095±0.52 3.115±0.31 5.899±0.39 2.651±0.29 1.768±0.41 0.959±0.09 1.869±0.51 1.287±0.40 3.404±0.89 0.789±0.20 3.051±0.95 1.476±0.38 2.818±1.42

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