C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021090 Lrrc9 10090 + 12:72441866-72514334 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000160394 Lrrc9-004 72442242-72454766 retained_intron
  ENSMUST00000161195 Lrrc9-006 72442035-72514334 processed_transcript
  ENSMUST00000161284 Lrrc9-002 72441933-72497239 protein_coding
  ENSMUST00000161547 Lrrc9-007 72476074-72477661 retained_intron
  ENSMUST00000161957 Lrrc9-005 72442249-72474210 retained_intron
  ENSMUST00000162159 Lrrc9-001 72441866-72510565 protein_coding
  ENSMUST00000162179 Lrrc9-003 72441949-72467526 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000160394ENSMUST00000161195ENSMUST00000161284ENSMUST00000161547ENSMUST00000161957ENSMUST00000162159ENSMUST00000162179
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000160394 N/A 0.143±0.00 N/A N/A N/A N/A 0.036±0.00 N/A N/A 0.169±0.00 N/A N/A N/A N/A
ENSMUST00000161195 0.172±0.03 0.215±0.09 N/A 0.116±0.00 0.160±0.08 N/A 0.021±0.00 0.029±0.00 N/A 0.109±0.00 N/A 0.272±0.11 0.048±0.02 N/A
ENSMUST00000161284 0.086±0.00 0.265±0.16 0.009±0.00 0.194±0.00 0.176±0.08 0.042±0.01 N/A 0.013±0.00 0.026±0.01 0.091±0.00 0.032±0.00 0.210±0.07 0.072±0.00 20.005±10.58
ENSMUST00000161547 N/A 0.501±0.20 N/A N/A N/A N/A N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A
ENSMUST00000161957 N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A 0.013±0.00 N/A N/A N/A 0.039±0.02 N/A
ENSMUST00000162159 0.084±0.00 0.136±0.00 0.012±0.00 N/A 0.262±0.13 N/A 0.025±0.01 0.033±0.01 0.016±0.01 N/A 0.006±0.00 0.343±0.15 N/A 13.716±1.63
ENSMUST00000162179 N/A 0.065±0.00 N/A N/A N/A N/A 0.017±0.00 N/A 0.025±0.01 N/A 0.018±0.00 N/A 0.068±0.03 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZY CIL_0005ZY_0003 CGP 12:72211752-72514334
CIL_000606 CIL_000606_0003 CGP 12:72441866-72580213

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054352 lrrc9 leucine rich repeat containing 9 protein_coding Danio_rerio
ENSG00000131951 LRRC9 leucine rich repeat containing 9 protein_coding Homo_sapiens

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