C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sec61 gamma subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132432 SEC61G 9606 - 7:54752250-54759974 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000352861 SEC61G-201 54752251-54759246 protein_coding
  ENST00000395535 SEC61G-002 54752250-54759246 protein_coding
  ENST00000415949 SEC61G-001 54752253-54759974 protein_coding
  ENST00000450622 SEC61G-005 54752257-54759182 protein_coding
  ENST00000460484 SEC61G-003 54754792-54759198 retained_intron
  ENST00000461536 SEC61G-006 54755503-54759215 retained_intron
  ENST00000480303 SEC61G-004 54755405-54759241 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000352861ENST00000395535ENST00000450622ENST00000460484
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000352861 55.127±0.00 58.074±0.00 5.145±0.00 38.582±21.24 35.856±12.81 35.439±16.85 25.134±2.36 36.201±7.17 28.807±6.76 23.894±2.61 21.048±6.02 99.410±60.15 65.273±42.48 109.187±11.94
ENST00000395535 N/A N/A N/A N/A N/A N/A 3.741±0.00 N/A N/A 10.043±0.00 N/A 20.727±0.00 7.194±0.00 17.480±0.00
ENST00000450622 N/A N/A N/A 12.711±0.00 N/A 37.843±0.00 N/A 23.011±0.00 32.419±0.00 13.295±0.00 7.901±0.00 41.204±0.00 21.132±6.86 19.214±0.00
ENST00000460484 N/A N/A 0.221±0.00 N/A N/A 1.093±0.00 N/A N/A N/A 1.902±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LU CIL_0006LU_0001 CGP 7:54542325-54759974
CIL_000647 CIL_000647_0001 CGP 7:54752250-55256620

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0005783 IEA endoplasmic reticulum
GO:0006412 TAS translation
GO:0006605 IEA protein targeting
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0006886 IEA intracellular protein transport
GO:0008565 ISS protein transporter activity
GO:0010467 TAS gene expression
GO:0015031 IEA protein transport
GO:0015450 IEA P-P-bond-hydrolysis-driven protein transmembrane transporter activity
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0044267 TAS cellular protein metabolic process
GO:0045047 ISS protein targeting to ER
GO:0071806 IEA protein transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018637 sec61g Sec61 gamma subunit protein_coding Danio_rerio
ENSMUSG00000078974 Sec61g SEC61, gamma subunit protein_coding Mus_musculus

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