C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec61 gamma subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450622 SEC61G-005 ENSG00000132432 9606 - 7:54752257-54759182 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000450622
Transcript ID Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000450622 12.711±0.00 37.843±0.00 23.011±0.00 32.419±0.00 13.295±0.00 7.901±0.00 41.204±0.00 21.132±6.86 19.214±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LU CIL_0006LU_0001 CGP 7:54542325-54759974
CIL_000647 CIL_000647_0001 CGP 7:54752250-55256620

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0005783 IEA endoplasmic reticulum
GO:0006412 TAS translation
GO:0006605 IEA protein targeting
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0006886 IEA intracellular protein transport
GO:0008565 ISS protein transporter activity
GO:0010467 TAS gene expression
GO:0015031 IEA protein transport
GO:0015450 IEA P-P-bond-hydrolysis-driven protein transmembrane transporter activity
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0044267 TAS cellular protein metabolic process
GO:0045047 ISS protein targeting to ER
GO:0071806 IEA protein transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160052 Gm10177-002 processed_transcript Mus_musculus 0 296
ENSMUST00000178855 Sec61g-202 protein_coding Mus_musculus 0 296
ENSMUST00000166950 Sec61g-201 protein_coding Mus_musculus 0 296
ENSMUST00000109641 Sec61g-002 protein_coding Mus_musculus 0 296
ENSMUST00000109642 Sec61g-005 protein_coding Mus_musculus 0 296
ENSMUST00000109643 Sec61g-001 protein_coding Mus_musculus 0 296
ENSMUST00000161698 Gm10177-001 transcribed_processed_pseudogene Mus_musculus 0 294
ENSMUST00000121602 Gm16412-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000119635 Gm15266-001 unprocessed_pseudogene Mus_musculus 0 268
ENSMUST00000122243 Gm11575-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000121191 Gm12881-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000120497 Gm14989-001 processed_pseudogene Mus_musculus 0 255

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