C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tumor protein, translationally-controlled 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133112 TPT1 9606 - 13:45333471-45341370 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309246 TPT1-004 45338185-45341086 protein_coding
  ENST00000379055 TPT1-003 45337302-45341158 protein_coding
  ENST00000379056 TPT1-002 45336873-45341212 protein_coding
  ENST00000379060 TPT1-011 45337198-45341122 protein_coding
  ENST00000442760 TPT1-007 45340026-45341183 retained_intron
  ENST00000484604 TPT1-005 45337064-45339848 retained_intron
  ENST00000490277 TPT1-006 45337177-45341155 retained_intron
  ENST00000527226 TPT1-012 45338687-45341158 protein_coding
  ENST00000528619 TPT1-008 45336899-45339533 protein_coding
  ENST00000529421 TPT1-013 45337053-45340402 processed_transcript
  ENST00000530245 TPT1-009 45337178-45339533 protein_coding
  ENST00000530705 TPT1-001 45333471-45341370 protein_coding
  ENST00000533567 TPT1-010 45337177-45340258 retained_intron
  ENST00000616577 TPT1-201 45333471-45341284 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309246ENST00000379056ENST00000379060ENST00000527226ENST00000529421ENST00000530705
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 544.271±0.00 N/A
ENST00000379056 376.962±0.00 546.622±0.00 46.673±0.00 87.377±33.28 225.156±91.30 330.256±233.83 133.211±78.20 236.428±90.39 135.726±8.32 265.378±142.71 402.867±133.07 652.116±365.42 460.653±51.89 227.712±130.82
ENST00000379060 1619.530±0.00 2256.800±0.00 85.094±0.00 273.743±177.12 875.247±533.69 1360.342±1086.15 450.716±357.16 757.751±305.83 703.902±422.85 1433.444±1100.65 1997.033±1500.94 2158.967±939.01 2076.830±674.45 861.781±611.11
ENST00000527226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1781.480±0.00 N/A 277.440±0.00
ENST00000529421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 998.223±0.00 689.783±37.59 N/A
ENST00000530705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.687±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005771 IDA multivesicular body
GO:0006816 IC calcium ion transport
GO:0006874 IC cellular calcium ion homeostasis
GO:0008134 IEA transcription factor binding
GO:0009615 IEP response to virus
GO:0019827 IEA stem cell maintenance
GO:0042981 NAS regulation of apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0045298 IDA tubulin complex
GO:0070062 IDA extracellular vesicular exosome
GO:1902230 IMP negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage
GO:2000384 IEA negative regulation of ectoderm development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092693 tpt1 tumor protein, translationally-controlled 1 protein_coding Danio_rerio
ENSMUSG00000060126 Tpt1 tumor protein, translationally-controlled 1 protein_coding Mus_musculus

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