C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: THUMP domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345094 THUMPD3-001 ENSG00000134077 9606 + 3:9363052-9386791 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345094
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345094 1.794±0.00 1.597±0.00 4.313±0.00 4.137±0.00 2.650±0.00 2.469±0.00 3.869±0.00 2.291±0.33 1.332±0.00 1.181±0.16 3.025±1.20 1.722±0.47 4.500±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QQ CIL_0004QQ_0001 CGP 3:8775402-9363053
CIL_0004QB CIL_0004QB_0001 CGP 3:8980591-9386791
CIL_0004QC CIL_0004QC_0001 CGP 3:9362842-9479240

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032398 Thumpd3-001 protein_coding Mus_musculus 0 1513
ENSMUST00000137396 Thumpd3-002 processed_transcript Mus_musculus 0 880
ENSMUST00000153310 Thumpd3-008 processed_transcript Mus_musculus 0 566
ENSMUST00000155378 Thumpd3-003 protein_coding Mus_musculus 0 507
ENSMUST00000145054 Thumpd3-006 processed_transcript Mus_musculus 0 261
ENSMUST00000134657 Thumpd3-007 processed_transcript Mus_musculus 0 259

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