C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: contactin 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134115 CNTN6 9606 + 3:1092576-1404217 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000350110 CNTN6-004 1092661-1403594 protein_coding
  ENST00000394261 CNTN6-003 1093024-1298369 nonsense_mediated_decay
  ENST00000397479 CNTN6-002 1092658-1403442 nonsense_mediated_decay
  ENST00000413210 CNTN6-005 1092722-1147967 nonsense_mediated_decay
  ENST00000446702 CNTN6-001 1092576-1404217 protein_coding
  ENST00000485257 CNTN6-006 1401285-1402801 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLungOvaryPlacentaTestisENST00000350110ENST00000394261ENST00000397479ENST00000413210ENST00000446702ENST00000485257
Transcript ID Brain Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000350110 0.437±0.07 0.100±0.00 N/A N/A 0.422±0.00 0.030±0.00 0.359±0.00 0.043±0.00
ENST00000394261 N/A N/A N/A N/A N/A N/A 0.012±0.00 0.089±0.00
ENST00000397479 N/A 0.031±0.00 0.052±0.01 N/A 0.394±0.07 0.079±0.00 0.481±0.64 0.170±0.00
ENST00000413210 N/A N/A N/A N/A N/A N/A N/A 0.359±0.00
ENST00000446702 0.510±0.00 N/A N/A 0.028±0.00 0.249±0.00 N/A 0.236±0.00 N/A
ENST00000485257 N/A 0.069±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050I CIL_00050I_0001 CGP 3:196596-1404217
CIL_00050H CIL_00050H_0001 CGP 3:1092576-3057956

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007219 IEA Notch signaling pathway
GO:0007411 TAS axon guidance
GO:0007417 TAS central nervous system development
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000030092 Cntn6 contactin 6 protein_coding Mus_musculus

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