C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00050H_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000134115-ENSG00000144619 CGP 9606 3:1092576-3057956
GeneTranscriptPositionBiotype
ENSG00000134115 (CNTN6)
contactin 6 		ENST00000350110 (CNTN6-004) 1092661-1403594 protein_coding
ENST00000394261 (CNTN6-003) 1093024-1298369 nonsense_mediated_decay
ENST00000397479 (CNTN6-002) 1092658-1403442 nonsense_mediated_decay
ENST00000413210 (CNTN6-005) 1092722-1147967 nonsense_mediated_decay
ENST00000446702 (CNTN6-001) 1092576-1404217 protein_coding
ENST00000485257 (CNTN6-006) 1401285-1402801 retained_intron
ENSG00000144619 (CNTN4)
contactin 4 		ENST00000397459 (CNTN4-002) 2892215-3056355 protein_coding
ENST00000397461 (CNTN4-001) 2238829-3057953 protein_coding
ENST00000418658 (CNTN4-009) 2098926-3057953 protein_coding
ENST00000422330 (CNTN4-004) 2098813-2745687 protein_coding
ENST00000427331 (CNTN4-201) 2571341-3057956 protein_coding
ENST00000427741 (CNTN4-003) 2098866-3042995 nonsense_mediated_decay
ENST00000430505 (CNTN4-010) 2511589-3037676 retained_intron
ENST00000434053 (CNTN4-011) 2511670-2745697 protein_coding
ENST00000438282 (CNTN4-006) 2511350-2989013 retained_intron
ENST00000455083 (CNTN4-005) 2098888-2736323 protein_coding
ENST00000473058 (CNTN4-013) 2866420-2887224 processed_transcript
ENST00000473173 (CNTN4-014) 2882739-2887095 retained_intron
ENST00000473845 (CNTN4-015) 2900711-2927631 protein_coding
ENST00000475817 (CNTN4-017) 2900714-2999144 processed_transcript
ENST00000480113 (CNTN4-012) 2735873-2745627 retained_intron
ENST00000484686 (CNTN4-016) 3039624-3057953 retained_intron
ENST00000490876 (CNTN4-007) 2098928-2099773 processed_transcript
ENSG00000184423 (AC090043.1)
 ENST00000423801 (AC090043.1-001) 1595777-1596245 processed_pseudogene
ENSG00000214073 (RPL21P17)
ribosomal protein L21 pseudogene 17 		ENST00000397467 (RPL21P17-001) 1905651-1906125 processed_pseudogene
ENSG00000225044 (RP11-204C23.1)
 ENST00000418972 (RP11-204C23.1-001) 1962381-1987470 lincRNA
ENSG00000225310 (DNAJC19P4)
DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene 4 		ENST00000440115 (DNAJC19P4-001) 2985231-2985575 processed_pseudogene
ENSG00000227588 (CNTN4-AS2)
CNTN4 antisense RNA 2 		ENST00000447256 (CNTN4-AS2-001) 2110409-2144241 lincRNA
ENSG00000230398 (HINT2P1)
histidine triad nucleotide binding protein 2 pseudogene 1 		ENST00000419438 (HINT2P1-001) 2362258-2362738 processed_pseudogene
ENSG00000232563 (CRB3P1)
crumbs family member 3 pseudogene 1 		ENST00000449338 (CRB3P1-001) 1394173-1394448 processed_pseudogene
ENSG00000237990 (CNTN4-AS1)
CNTN4 antisense RNA 1 		ENST00000442749 (CNTN4-AS1-001) 3039033-3061145 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00050H_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030092-ENSMUSG00000064293 CGP 10090 6:104492790-106699310
GeneTranscriptPositionBiotype
ENSMUSG00000030092 (Cntn6)
contactin 6 		ENSMUST00000089215 (Cntn6-001) 104492922-104863406 protein_coding
ENSMUST00000161070 (Cntn6-003) 104492811-104863248 protein_coding
ENSMUST00000161413 (Cntn6-002) 104493054-104571662 retained_intron
ENSMUST00000161446 (Cntn6-005) 104492790-104642949 protein_coding
ENSMUST00000162872 (Cntn6-004) 104493248-104863401 protein_coding
ENSMUSG00000064293 (Cntn4)
contactin 4 		ENSMUST00000079416 (Cntn4-006) 106119006-106673487 protein_coding
ENSMUST00000089208 (Cntn4-001) 105677775-106699310 protein_coding
ENSMUST00000113258 (Cntn4-005) 106118765-106618945 protein_coding
ENSMUST00000113260 (Cntn4-007) 105924800-106674270 protein_coding
ENSMUST00000113261 (Cntn4-004) 105677745-106674264 protein_coding
ENSMUST00000113264 (Cntn4-201) 105677745-106699305 protein_coding
ENSMUST00000123596 (Cntn4-010) 106679270-106680242 retained_intron
ENSMUST00000125904 (Cntn4-002) 106118918-106525530 processed_transcript
ENSMUST00000130040 (Cntn4-003) 106119055-106345739 processed_transcript
ENSMUST00000132044 (Cntn4-009) 105677660-105840506 processed_transcript
ENSMUST00000132395 (Cntn4-008) 106513558-106697756 processed_transcript
ENSMUST00000142626 (Cntn4-011) 106694153-106697900 processed_transcript
ENSMUSG00000085067 (Gm15631)
predicted gene 15631 		ENSMUST00000142962 (Gm15631-001) 105674755-105677581 processed_transcript

Mus musculus Ensembl (GRCm38)

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Genes
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00050H_0001ENSG00000134115ENST00000350110ENST00000394261ENST00000397479ENST00000413210ENST00000446702ENST00000485257ENSG00000144619ENST00000397459ENST00000397461ENST00000418658ENST00000422330ENST00000427331ENST00000427741ENST00000430505ENST00000434053ENST00000438282ENST00000455083ENST00000473058ENST00000473173ENST00000473845ENST00000475817ENST00000480113ENST00000484686ENST00000490876ENSG00000184423ENST00000423801ENSG00000214073ENST00000397467ENSG00000225044ENST00000418972ENSG00000225310ENST00000440115ENSG00000227588ENST00000447256ENSG00000230398ENST00000419438ENSG00000232563ENST00000449338ENSG00000237990ENST00000442749CIL_00050H_0002ENSMUSG00000030092ENSMUST00000089215ENSMUST00000161070ENSMUST00000161413ENSMUST00000161446ENSMUST00000162872ENSMUSG00000064293ENSMUST00000079416ENSMUST00000089208ENSMUST00000113258ENSMUST00000113260ENSMUST00000113261ENSMUST00000113264ENSMUST00000123596ENSMUST00000125904ENSMUST00000130040ENSMUST00000132044ENSMUST00000132395ENSMUST00000142626ENSMUSG00000085067ENSMUST00000142962
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00050H_0001ENSG00000134115ENST00000350110ENST00000394261ENST00000397479ENST00000413210ENST00000446702ENST00000485257ENSG00000144619ENST00000397459ENST00000397461ENST00000418658ENST00000422330ENST00000427331ENST00000430505ENST00000434053ENST00000438282ENST00000473058ENST00000473845ENST00000475817ENST00000484686ENSG00000184423ENST00000423801ENSG00000214073ENST00000397467ENSG00000225044ENST00000418972ENSG00000225310ENST00000440115ENSG00000227588ENST00000447256ENSG00000230398ENST00000419438ENSG00000232563ENST00000449338ENSG00000237990ENST00000442749CIL_00050H_0002ENSMUSG00000030092ENSMUST00000089215ENSMUST00000161070ENSMUST00000161413ENSMUST00000161446ENSMUST00000162872ENSMUSG00000064293ENSMUST00000079416ENSMUST00000089208ENSMUST00000113258ENSMUST00000113260ENSMUST00000113261ENSMUST00000113264ENSMUST00000123596ENSMUST00000125904ENSMUST00000132044ENSMUST00000132395ENSMUST00000142626ENSMUSG00000085067ENSMUST00000142962
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134115 ENST00000350110 N/A N/A N/A 0.437±0.07 0.100±0.00 N/A N/A N/A N/A 0.422±0.00 N/A 0.030±0.00 0.359±0.00 0.043±0.00
ENST00000394261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 0.089±0.00
ENST00000397479 N/A N/A N/A N/A 0.031±0.00 0.052±0.01 N/A N/A N/A 0.394±0.07 N/A 0.079±0.00 0.481±0.64 0.170±0.00
ENST00000413210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.359±0.00
ENST00000446702 N/A N/A N/A 0.510±0.00 N/A N/A N/A 0.028±0.00 N/A 0.249±0.00 N/A N/A 0.236±0.00 N/A
ENST00000485257 N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144619 ENST00000397459 0.280±0.00 0.826±0.00 N/A 1.982±0.00 0.795±0.00 N/A 0.272±0.03 N/A 0.661±0.00 0.502±0.00 0.211±0.00 0.250±0.10 0.614±0.17 10.979±1.78
ENST00000397461 0.362±0.00 0.934±0.00 N/A 0.647±0.04 0.327±0.00 0.419±0.00 0.253±0.00 0.512±0.00 N/A 0.388±0.00 N/A 0.161±0.05 N/A N/A
ENST00000418658 N/A N/A N/A 0.727±0.00 0.462±0.00 0.469±0.00 N/A N/A N/A 0.413±0.00 N/A N/A N/A 0.803±0.00
ENST00000422330 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.467±0.00 N/A N/A N/A N/A
ENST00000427331 N/A N/A N/A 0.861±0.00 N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A 0.188±0.00 N/A
ENST00000427741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430505 N/A N/A 0.538±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.265±0.00 N/A N/A
ENST00000438282 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.419±0.00 N/A N/A N/A N/A
ENST00000455083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473058 N/A N/A N/A N/A N/A N/A 0.673±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000473173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473845 N/A N/A N/A N/A N/A N/A N/A N/A 2.001±0.00 N/A N/A N/A N/A N/A
ENST00000475817 N/A N/A 2.633±0.00 6.115±0.00 3.018±0.00 N/A 0.476±0.00 N/A N/A N/A 1.486±0.00 N/A N/A N/A
ENST00000480113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484686 N/A N/A N/A N/A N/A 0.904±0.00 N/A 0.030±0.00 0.421±0.30 N/A 0.095±0.00 N/A 0.497±0.00 N/A
ENST00000490876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000184423 ENST00000423801 N/A 0.033±0.00 N/A N/A 0.199±0.00 N/A 0.029±0.00 N/A N/A N/A 0.028±0.00 0.062±0.00 N/A N/A
ENSG00000214073 ENST00000397467 0.202±0.00 0.211±0.00 N/A 0.092±0.00 0.119±0.00 0.334±0.00 0.144±0.00 0.242±0.00 N/A 0.522±0.03 0.138±0.00 0.082±0.01 0.041±0.00 0.263±0.06
ENSG00000225044 ENST00000418972 N/A 0.184±0.00 N/A 0.096±0.00 0.092±0.00 0.043±0.00 N/A 0.046±0.00 0.080±0.00 N/A 0.040±0.00 N/A N/A 0.208±0.08
ENSG00000225310 ENST00000440115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.098±0.00
ENSG00000227588 ENST00000447256 N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A 0.403±0.10
ENSG00000230398 ENST00000419438 N/A N/A 0.759±0.00 0.088±0.00 0.758±0.00 0.358±0.00 N/A N/A 0.164±0.00 0.546±0.03 N/A 0.138±0.00 N/A N/A
ENSG00000232563 ENST00000449338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.460±0.00
ENSG00000237990 ENST00000442749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030092 ENSMUST00000089215 N/A N/A 1.514±0.05 1.322±0.29 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A 0.022±0.02 N/A
ENSMUST00000161070 N/A N/A N/A 0.337±0.08 N/A N/A 0.011±0.00 0.014±0.00 0.008±0.00 N/A 0.002±0.00 0.049±0.02 0.013±0.01 N/A
ENSMUST00000161413 N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161446 N/A N/A N/A N/A N/A N/A 0.086±0.02 0.063±0.01 N/A N/A N/A N/A N/A N/A
ENSMUST00000162872 0.013±0.00 N/A N/A 0.966±0.61 0.025±0.00 0.070±0.03 N/A 0.012±0.00 0.017±0.00 0.064±0.00 0.011±0.01 0.065±0.04 0.019±0.01 1.555±0.18
ENSMUSG00000064293 ENSMUST00000079416 N/A N/A N/A N/A N/A N/A N/A 0.070±0.02 N/A N/A N/A 0.211±0.00 N/A N/A
ENSMUST00000089208 0.027±0.01 N/A 1.226±0.65 1.589±0.08 N/A 0.047±0.00 0.006±0.00 N/A 0.012±0.01 0.057±0.01 0.005±0.00 0.250±0.12 0.015±0.00 0.021±0.01
ENSMUST00000113258 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A 0.164±0.06 N/A N/A
ENSMUST00000113260 N/A 0.051±0.00 N/A 2.642±0.00 N/A 0.092±0.05 N/A 0.055±0.00 0.008±0.00 N/A N/A 0.412±0.14 0.016±0.00 0.051±0.01
ENSMUST00000113261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A
ENSMUST00000113264 N/A N/A 0.792±0.00 0.902±0.19 N/A N/A N/A N/A N/A N/A 0.002±0.00 N/A N/A 0.089±0.00
ENSMUST00000123596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A
ENSMUST00000125904 N/A N/A N/A N/A N/A 0.134±0.09 N/A N/A 0.008±0.00 N/A N/A 0.525±0.22 N/A N/A
ENSMUST00000130040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132044 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A 0.067±0.00 N/A
ENSMUST00000132395 N/A N/A N/A 4.110±0.00 0.042±0.02 0.039±0.00 0.023±0.01 N/A 0.002±0.00 0.120±0.00 N/A 0.516±0.34 0.011±0.01 0.069±0.05
ENSMUST00000142626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A
ENSMUSG00000085067 ENSMUST00000142962 N/A N/A 0.018±0.01 0.579±0.08 N/A 0.146±0.00 N/A N/A N/A N/A N/A 0.065±0.00 0.016±0.00 0.171±0.14

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