C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397479 CNTN6-002 ENSG00000134115 9606 + 3:1092658-1403442 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLungOvaryPlacentaTestisENST00000397479
Transcript ID Breast Colon Lung Ovary Placenta Testis
ENST00000397479 0.031±0.00 0.052±0.01 0.394±0.07 0.079±0.00 0.481±0.64 0.170±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050I CIL_00050I_0001 CGP 3:196596-1404217
CIL_00050H CIL_00050H_0001 CGP 3:1092576-3057956

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161070 Cntn6-003 protein_coding Mus_musculus 0 3999
ENSMUST00000162872 Cntn6-004 protein_coding Mus_musculus 0 3356
ENSMUST00000089215 Cntn6-001 protein_coding Mus_musculus 0 3356
ENSMUST00000161446 Cntn6-005 protein_coding Mus_musculus 0 645
ENSMUST00000161413 Cntn6-002 retained_intron Mus_musculus 0 355

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