C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: contactin 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030092 Cntn6 10090 + 6:104492790-104863406 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000089215 Cntn6-001 104492922-104863406 protein_coding
  ENSMUST00000161070 Cntn6-003 104492811-104863248 protein_coding
  ENSMUST00000161413 Cntn6-002 104493054-104571662 retained_intron
  ENSMUST00000161446 Cntn6-005 104492790-104642949 protein_coding
  ENSMUST00000162872 Cntn6-004 104493248-104863401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089215ENSMUST00000161070ENSMUST00000161413ENSMUST00000161446ENSMUST00000162872
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089215 N/A 1.514±0.05 1.322±0.29 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A 0.022±0.02 N/A
ENSMUST00000161070 N/A N/A 0.337±0.08 N/A N/A 0.011±0.00 0.014±0.00 0.008±0.00 N/A 0.002±0.00 0.049±0.02 0.013±0.01 N/A
ENSMUST00000161413 N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161446 N/A N/A N/A N/A N/A 0.086±0.02 0.063±0.01 N/A N/A N/A N/A N/A N/A
ENSMUST00000162872 0.013±0.00 N/A 0.966±0.61 0.025±0.00 0.070±0.03 N/A 0.012±0.00 0.017±0.00 0.064±0.00 0.011±0.01 0.065±0.04 0.019±0.01 1.555±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050I CIL_00050I_0002 CGP 6:103510876-104863406
CIL_00050H CIL_00050H_0002 CGP 6:104492790-106699310

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0007155 IEA cell adhesion
GO:0007219 IEA Notch signaling pathway
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000134115 CNTN6 contactin 6 protein_coding Homo_sapiens

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