C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027881 Prpf38b 10090 - 3:108902667-108911727 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029480 Prpf38b-001 108902807-108911727 protein_coding
  ENSMUST00000125208 Prpf38b-006 108904261-108905585 processed_transcript
  ENSMUST00000127478 Prpf38b-005 108904476-108906118 processed_transcript
  ENSMUST00000129273 Prpf38b-003 108902667-108911696 processed_transcript
  ENSMUST00000145720 Prpf38b-002 108906561-108911710 processed_transcript
  ENSMUST00000156808 Prpf38b-004 108904621-108907981 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029480ENSMUST00000125208ENSMUST00000127478ENSMUST00000129273ENSMUST00000145720ENSMUST00000156808
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029480 7.163±1.99 10.621±0.47 19.855±0.06 16.218±5.19 4.343±0.76 4.924±0.99 2.772±0.61 5.823±1.03 12.880±11.00 9.198±1.07 2.903±0.54 18.185±7.01 14.915±2.58 8.901±6.62
ENSMUST00000125208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.637±0.00 N/A 144.298±0.00
ENSMUST00000127478 N/A N/A N/A 45.397±0.00 N/A N/A N/A N/A N/A N/A N/A 104.798±0.00 67.791±14.28 N/A
ENSMUST00000129273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.148±0.15 N/A N/A N/A
ENSMUST00000145720 10.323±2.33 63.321±25.35 N/A N/A 12.262±6.39 12.296±10.20 2.034±0.00 3.847±0.56 4.555±2.33 9.455±2.48 N/A 19.942±8.56 5.439±0.00 4.494±1.45
ENSMUST00000156808 N/A N/A N/A 35.183±0.00 N/A N/A N/A N/A N/A N/A N/A 87.481±0.00 41.969±11.15 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EP CIL_0007EP_0002 CGP 3:108853678-108911727

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053101 prpf38b PRP38 pre-mRNA processing factor 38 (yeast) domain containing B protein_coding Danio_rerio
ENSG00000134186 PRPF38B pre-mRNA processing factor 38B protein_coding Homo_sapiens

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