C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: crumbs family member 1, photoreceptor morphogenesis associated
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134376 CRB1 9606 + 1:197268204-197478455 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367397 CRB1-003 197413829-197444819 protein_coding
  ENST00000367399 CRB1-005 197268413-197477879 protein_coding
  ENST00000367400 CRB1-004 197268278-197478455 protein_coding
  ENST00000448952 CRB1-002 197442170-197478455 protein_coding
  ENST00000475659 CRB1-006 197268276-197358128 retained_intron
  ENST00000476483 CRB1-008 197360349-197421441 processed_transcript
  ENST00000480086 CRB1-007 197422811-197427837 processed_transcript
  ENST00000484075 CRB1-001 197268278-197478455 nonsense_mediated_decay
  ENST00000535699 CRB1-201 197268204-197478454 protein_coding
  ENST00000538660 CRB1-202 197268204-197478454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367397ENST00000367399ENST00000367400ENST00000448952ENST00000475659ENST00000476483ENST00000484075ENST00000535699ENST00000538660
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367397 0.002±0.00 0.005±0.00 0.012±0.00 N/A N/A N/A N/A N/A 0.012±0.01 N/A N/A N/A N/A N/A
ENST00000367399 N/A N/A N/A 1.002±0.06 N/A N/A 0.010±0.00 N/A N/A N/A 0.242±0.00 0.078±0.05 0.039±0.00 N/A
ENST00000367400 N/A N/A N/A 1.362±0.00 N/A N/A N/A N/A N/A N/A N/A 0.066±0.00 N/A 0.458±0.13
ENST00000448952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.279±0.16 N/A N/A
ENST00000475659 N/A N/A 0.179±0.00 1.051±0.26 0.015±0.00 0.125±0.07 0.074±0.00 N/A 0.020±0.00 N/A N/A N/A N/A N/A
ENST00000476483 N/A N/A N/A N/A 0.240±0.00 N/A N/A N/A N/A N/A N/A 0.169±0.00 0.083±0.00 N/A
ENST00000484075 N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535699 N/A N/A N/A 0.637±0.00 N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A N/A N/A
ENST00000538660 N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A 0.024±0.00 N/A 0.031±0.02 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LY CIL_0001LY_0002 CGP 1:197268204-197775696

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005886 IEA plasma membrane
GO:0005902 IEA microvillus
GO:0007009 IEA plasma membrane organization
GO:0007163 TAS establishment or maintenance of cell polarity
GO:0007267 TAS cell-cell signaling
GO:0016021 IEA integral component of membrane
GO:0042462 IEA eye photoreceptor cell development
GO:0061024 IEA membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062245 crb1 crumbs homolog 1 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000063681 Crb1 crumbs homolog 1 (Drosophila) protein_coding Mus_musculus

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