C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: crumbs family member 1, photoreceptor morphogenesis associated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367400 CRB1-004 ENSG00000134376 9606 + 1:197268278-197478455 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryTestisENST00000367400
Transcript ID Brain Ovary Testis
ENST00000367400 1.362±0.00 0.066±0.00 0.458±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LY CIL_0001LY_0002 CGP 1:197268204-197775696

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 IEA extracellular region
GO:0005886 IEA plasma membrane
GO:0005902 IEA microvillus
GO:0007009 IEA plasma membrane organization
GO:0007163 TAS establishment or maintenance of cell polarity
GO:0007267 TAS cell-cell signaling
GO:0016021 IEA integral component of membrane
GO:0042462 IEA eye photoreceptor cell development
GO:0061024 IEA membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059825 Crb1-001 protein_coding Mus_musculus 0 3764
ENSMUST00000173947 Gm18522-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000174783 Gm18520-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000177313 Gm18513-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000159409 Gm16273-001 unprocessed_pseudogene Mus_musculus 2e-26 126

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