C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retina and anterior neural fold homeobox
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000256852 RAX-002 ENSG00000134438 9606 - 18:59267035-59273385 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000256852
Transcript ID Brain Testis
ENST00000256852 0.155±0.00 0.051±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071E CIL_00071E_0001 CGP 18:59220168-59274086
CIL_0007FD CIL_0007FD_0001 CGP 18:59267035-59318649

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007601 TAS visual perception
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025396 Rax-201 protein_coding Mus_musculus 0 475

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