C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box helicase 56
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136271 DDX56 9606 - 7:44565417-44575051 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258772 DDX56-001 44565417-44574002 protein_coding
  ENST00000415758 DDX56-004 44568216-44573908 nonsense_mediated_decay
  ENST00000421223 DDX56-002 44565805-44575051 nonsense_mediated_decay
  ENST00000431640 DDX56-003 44566002-44573925 protein_coding
  ENST00000433257 DDX56-008 44565837-44573664 nonsense_mediated_decay
  ENST00000446987 DDX56-007 44565804-44573895 nonsense_mediated_decay
  ENST00000448192 DDX56-011 44566138-44569842 protein_coding
  ENST00000467318 DDX56-006 44565837-44573664 processed_transcript
  ENST00000473924 DDX56-010 44569752-44570765 retained_intron
  ENST00000479440 DDX56-009 44572650-44573925 retained_intron
  ENST00000479602 DDX56-012 44565807-44567782 processed_transcript
  ENST00000485367 DDX56-005 44565819-44573758 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258772ENST00000421223ENST00000431640ENST00000446987ENST00000467318ENST00000479602ENST00000485367
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258772 N/A N/A N/A N/A 1.528±0.42 0.887±0.00 0.246±0.00 5.425±0.00 N/A N/A N/A 9.934±2.29 2.548±0.00 3.435±0.00
ENST00000421223 N/A N/A N/A N/A 1.128±0.42 1.190±0.00 N/A 0.692±0.00 N/A N/A N/A N/A N/A 2.922±0.86
ENST00000431640 N/A 9.542±0.00 4.049±0.00 4.751±0.26 4.517±0.65 3.946±1.03 1.121±0.00 4.482±0.00 2.386±0.00 N/A N/A 11.830±7.28 6.958±0.00 7.702±2.42
ENST00000446987 8.947±0.00 12.433±0.00 0.667±0.00 7.362±2.54 4.384±0.00 2.336±1.43 2.378±0.00 7.659±0.00 3.606±0.96 3.782±0.00 N/A 8.556±4.61 6.525±0.75 5.065±0.00
ENST00000467318 N/A N/A N/A N/A 1.197±0.00 N/A N/A N/A 8.065±0.00 N/A 5.069±0.54 2.437±0.00 N/A N/A
ENST00000479602 N/A N/A N/A N/A N/A N/A N/A N/A 19.580±0.00 N/A N/A N/A N/A N/A
ENST00000485367 4.308±0.00 8.644±0.00 N/A 2.435±0.00 4.074±0.00 1.842±0.89 3.732±3.48 14.165±0.00 6.643±0.00 7.648±4.26 15.003±0.00 12.660±9.40 14.803±9.46 6.824±3.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J3 CIL_0000J3_0001 CGP 7:44512535-44575051
CIL_0000J4 CIL_0000J4_0001 CGP 7:44565417-44582287

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004004 TAS ATP-dependent RNA helicase activity
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005730 IDA nucleolus
GO:0006200 TAS ATP catabolic process
GO:0006364 IEA rRNA processing
GO:0008152 IEA metabolic process
GO:0016020 IDA membrane
GO:0016787 IEA hydrolase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020913 ddx56 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 protein_coding Danio_rerio
ENSMUSG00000004393 Ddx56 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 protein_coding Mus_musculus

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