C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 56
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446987 DDX56-007 ENSG00000136271 9606 - 7:44565804-44573895 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000446987
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000446987 8.947±0.00 12.433±0.00 0.667±0.00 7.362±2.54 4.384±0.00 2.336±1.43 2.378±0.00 7.659±0.00 3.606±0.96 3.782±0.00 8.556±4.61 6.525±0.75 5.065±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J3 CIL_0000J3_0001 CGP 7:44512535-44575051
CIL_0000J4 CIL_0000J4_0001 CGP 7:44565417-44582287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005524 IEA ATP binding
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004507 Ddx56-001 protein_coding Mus_musculus 0 1668
ENSMUST00000151446 Ddx56-002 protein_coding Mus_musculus 0 532

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