C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000J3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000015520-ENSG00000136271 CGP 9606 7:44512535-44575051
GeneTranscriptPositionBiotype
ENSG00000015520 (NPC1L1)
NPC1-like 1 		ENST00000289547 (NPC1L1-001) 44512535-44541315 protein_coding
ENST00000381160 (NPC1L1-003) 44513361-44541315 protein_coding
ENST00000423141 (NPC1L1-002) 44533227-44541315 protein_coding
ENST00000546276 (NPC1L1-201) 44512538-44541315 protein_coding
ENSG00000136271 (DDX56)
DEAD (Asp-Glu-Ala-Asp) box helicase 56 		ENST00000258772 (DDX56-001) 44565417-44574002 protein_coding
ENST00000415758 (DDX56-004) 44568216-44573908 nonsense_mediated_decay
ENST00000421223 (DDX56-002) 44565805-44575051 nonsense_mediated_decay
ENST00000431640 (DDX56-003) 44566002-44573925 protein_coding
ENST00000433257 (DDX56-008) 44565837-44573664 nonsense_mediated_decay
ENST00000446987 (DDX56-007) 44565804-44573895 nonsense_mediated_decay
ENST00000448192 (DDX56-011) 44566138-44569842 protein_coding
ENST00000467318 (DDX56-006) 44565837-44573664 processed_transcript
ENST00000473924 (DDX56-010) 44569752-44570765 retained_intron
ENST00000479440 (DDX56-009) 44572650-44573925 retained_intron
ENST00000479602 (DDX56-012) 44565807-44567782 processed_transcript
ENST00000485367 (DDX56-005) 44565819-44573758 processed_transcript
CIL_0000J3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020447-ENSMUSG00000004393 CGP 10090 11:6211013-6267772
GeneTranscriptPositionBiotype
ENSMUSG00000004393 (Ddx56)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 		ENSMUST00000004507 (Ddx56-001) 6258919-6267772 protein_coding
ENSMUST00000139073 (Ddx56-004) 6265307-6266392 retained_intron
ENSMUST00000151446 (Ddx56-002) 6265637-6267772 protein_coding
ENSMUST00000155874 (Ddx56-003) 6267046-6267746 retained_intron
ENSMUSG00000020447 (Npc1l1)
NPC1-like 1 		ENSMUST00000004505 (Npc1l1-001) 6211013-6230143 protein_coding
ENSMUSG00000081153 (Gm11401)
predicted gene 11401 		ENSMUST00000117212 (Gm11401-001) 6242378-6242721 processed_pseudogene
ENSMUSG00000082640 (Gm11402)
predicted gene 11402 		ENSMUST00000122401 (Gm11402-001) 6240209-6240517 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000J3_0001ENSG00000015520ENST00000289547ENST00000381160ENST00000423141ENST00000546276ENSG00000136271ENST00000258772ENST00000415758ENST00000421223ENST00000431640ENST00000433257ENST00000446987ENST00000448192ENST00000467318ENST00000473924ENST00000479440ENST00000479602ENST00000485367CIL_0000J3_0002ENSMUSG00000004393ENSMUST00000004507ENSMUST00000139073ENSMUST00000151446ENSMUST00000155874ENSMUSG00000020447ENSMUST00000004505ENSMUSG00000081153ENSMUST00000117212ENSMUSG00000082640ENSMUST00000122401
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000J3_0001ENSG00000015520ENST00000289547ENST00000381160ENST00000423141ENST00000546276ENSG00000136271ENST00000258772ENST00000421223ENST00000431640ENST00000446987ENST00000467318ENST00000479602ENST00000485367CIL_0000J3_0002ENSMUSG00000004393ENSMUST00000004507ENSMUSG00000020447ENSMUST00000004505ENSMUSG00000081153ENSMUST00000117212ENSMUSG00000082640ENSMUST00000122401
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000015520 ENST00000289547 N/A N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A N/A N/A N/A N/A N/A
ENST00000381160 N/A N/A N/A N/A 0.066±0.05 N/A 0.011±0.00 1.265±0.00 N/A N/A N/A 0.145±0.00 0.019±0.00 N/A
ENST00000423141 N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A 0.212±0.00 N/A N/A
ENST00000546276 0.054±0.00 N/A N/A N/A N/A 0.343±0.00 0.027±0.00 N/A 3.034±0.00 0.038±0.00 N/A 0.121±0.00 0.034±0.00 0.290±0.00
ENSG00000136271 ENST00000258772 N/A N/A N/A N/A 1.528±0.42 0.887±0.00 0.246±0.00 5.425±0.00 N/A N/A N/A 9.934±2.29 2.548±0.00 3.435±0.00
ENST00000415758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421223 N/A N/A N/A N/A 1.128±0.42 1.190±0.00 N/A 0.692±0.00 N/A N/A N/A N/A N/A 2.922±0.86
ENST00000431640 N/A 9.542±0.00 4.049±0.00 4.751±0.26 4.517±0.65 3.946±1.03 1.121±0.00 4.482±0.00 2.386±0.00 N/A N/A 11.830±7.28 6.958±0.00 7.702±2.42
ENST00000433257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446987 8.947±0.00 12.433±0.00 0.667±0.00 7.362±2.54 4.384±0.00 2.336±1.43 2.378±0.00 7.659±0.00 3.606±0.96 3.782±0.00 N/A 8.556±4.61 6.525±0.75 5.065±0.00
ENST00000448192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467318 N/A N/A N/A N/A 1.197±0.00 N/A N/A N/A 8.065±0.00 N/A 5.069±0.54 2.437±0.00 N/A N/A
ENST00000473924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479602 N/A N/A N/A N/A N/A N/A N/A N/A 19.580±0.00 N/A N/A N/A N/A N/A
ENST00000485367 4.308±0.00 8.644±0.00 N/A 2.435±0.00 4.074±0.00 1.842±0.89 3.732±3.48 14.165±0.00 6.643±0.00 7.648±4.26 15.003±0.00 12.660±9.40 14.803±9.46 6.824±3.34
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004393 ENSMUST00000004507 18.852±0.21 14.693±0.83 14.532±2.88 17.149±6.24 13.224±1.66 7.976±1.24 7.445±1.50 12.868±0.96 17.216±8.58 10.414±1.51 9.077±0.72 13.616±2.96 18.937±10.32 11.927±5.05
ENSMUST00000139073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020447 ENSMUST00000004505 0.096±0.05 0.128±0.05 0.057±0.00 0.126±0.09 0.102±0.03 0.206±0.10 0.103±0.02 0.036±0.01 0.050±0.04 0.114±0.06 0.249±0.07 0.202±0.12 0.197±0.15 0.164±0.08
ENSMUSG00000081153 ENSMUST00000117212 0.370±0.23 N/A 0.090±0.05 0.067±0.02 0.184±0.00 N/A N/A N/A N/A 0.223±0.00 0.603±0.33 0.803±0.29 N/A 0.180±0.00
ENSMUSG00000082640 ENSMUST00000122401 0.300±0.00 0.600±0.29 0.163±0.10 0.096±0.04 0.774±0.32 0.415±0.00 N/A 0.205±0.00 0.026±0.01 0.283±0.03 0.161±0.00 0.697±0.33 0.065±0.03 0.595±0.00

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