C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004393 Ddx56 10090 - 11:6258919-6267772 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004507 Ddx56-001 6258919-6267772 protein_coding
  ENSMUST00000139073 Ddx56-004 6265307-6266392 retained_intron
  ENSMUST00000151446 Ddx56-002 6265637-6267772 protein_coding
  ENSMUST00000155874 Ddx56-003 6267046-6267746 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004507
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004507 18.852±0.21 14.693±0.83 14.532±2.88 17.149±6.24 13.224±1.66 7.976±1.24 7.445±1.50 12.868±0.96 17.216±8.58 10.414±1.51 9.077±0.72 13.616±2.96 18.937±10.32 11.927±5.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J3 CIL_0000J3_0002 CGP 11:6211013-6267772
CIL_0000J4 CIL_0000J4_0002 CGP 11:6258919-6274870

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005730 IDA nucleolus
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020913 ddx56 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 protein_coding Danio_rerio
ENSG00000136271 DDX56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 protein_coding Homo_sapiens

Loading