C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin associated protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137073 UBAP2 9606 - 9:33921693-34048949 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360802 UBAP2-201 33921693-34048949 protein_coding
  ENST00000379225 UBAP2-008 33935322-33948966 protein_coding
  ENST00000379235 UBAP2-007 33921859-33928835 protein_coding
  ENST00000379238 UBAP2-001 33921693-34048901 protein_coding
  ENST00000379239 UBAP2-202 33921693-33934364 protein_coding
  ENST00000412543 UBAP2-005 33944515-34048949 protein_coding
  ENST00000421278 UBAP2-004 33948374-33989043 protein_coding
  ENST00000459988 UBAP2-009 33996478-34048887 processed_transcript
  ENST00000462799 UBAP2-006 33948382-33963782 processed_transcript
  ENST00000474372 UBAP2-002 33923825-33934354 processed_transcript
  ENST00000480885 UBAP2-010 33994481-34048872 processed_transcript
  ENST00000488443 UBAP2-003 33927027-33941711 nonsense_mediated_decay
  ENST00000539807 UBAP2-203 33922412-34048949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360802ENST00000379238ENST00000379239ENST00000412543ENST00000421278ENST00000459988ENST00000462799ENST00000480885ENST00000539807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360802 N/A N/A 1.059±0.00 N/A N/A N/A N/A N/A N/A N/A 2.208±0.00 N/A 3.051±0.00 N/A
ENST00000379238 5.931±0.00 3.900±0.00 N/A 3.842±0.00 3.108±2.11 2.159±0.27 3.813±3.34 2.782±1.36 1.266±0.26 1.336±0.74 18.347±0.00 4.234±2.31 6.085±3.45 20.575±7.93
ENST00000379239 N/A 2.356±0.00 N/A N/A N/A N/A N/A 2.001±0.00 0.358±0.00 2.294±0.00 N/A 2.370±0.00 1.970±0.66 N/A
ENST00000412543 N/A N/A 1.580±0.00 2.125±0.00 3.198±0.00 N/A 1.826±0.00 2.038±0.00 N/A 3.182±0.00 N/A 4.744±2.67 12.097±0.00 38.293±0.00
ENST00000421278 N/A N/A N/A 6.207±0.00 N/A N/A N/A N/A 10.617±0.00 N/A 8.120±0.00 N/A N/A N/A
ENST00000459988 N/A N/A N/A N/A N/A 1.480±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462799 N/A N/A N/A N/A N/A N/A N/A 12.793±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480885 N/A N/A 0.679±0.00 N/A N/A 0.782±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.524±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AS CIL_0006AS_0001 CGP 9:33817567-34048949
CIL_0006B3 CIL_0006B3_0001 CGP 9:33921693-34127399

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060065 UBAP2 (1 of 2) ubiquitin associated protein 2 protein_coding Danio_rerio
ENSDARG00000088318 ubap2 ubiquitin associated protein 2 protein_coding Danio_rerio
ENSMUSG00000028433 Ubap2 ubiquitin-associated protein 2 protein_coding Mus_musculus

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