C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006AS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107341-ENSG00000137073 CGP 9606 9:33817567-34048949
GeneTranscriptPositionBiotype
ENSG00000107341 (UBE2R2)
ubiquitin-conjugating enzyme E2R 2 		ENST00000263228 (UBE2R2-001) 33817567-33920404 protein_coding
ENSG00000137073 (UBAP2)
ubiquitin associated protein 2 		ENST00000360802 (UBAP2-201) 33921693-34048949 protein_coding
ENST00000379225 (UBAP2-008) 33935322-33948966 protein_coding
ENST00000379235 (UBAP2-007) 33921859-33928835 protein_coding
ENST00000379238 (UBAP2-001) 33921693-34048901 protein_coding
ENST00000379239 (UBAP2-202) 33921693-33934364 protein_coding
ENST00000412543 (UBAP2-005) 33944515-34048949 protein_coding
ENST00000421278 (UBAP2-004) 33948374-33989043 protein_coding
ENST00000459988 (UBAP2-009) 33996478-34048887 processed_transcript
ENST00000462799 (UBAP2-006) 33948382-33963782 processed_transcript
ENST00000474372 (UBAP2-002) 33923825-33934354 processed_transcript
ENST00000480885 (UBAP2-010) 33994481-34048872 processed_transcript
ENST00000488443 (UBAP2-003) 33927027-33941711 nonsense_mediated_decay
ENST00000539807 (UBAP2-203) 33922412-34048949 protein_coding
ENSG00000200834 (Y_RNA)
Y RNA 		ENST00000363964 (Y_RNA.1-391) 33830978-33831078 misc_RNA
ENSG00000226801 (OSTCP8)
oligosaccharyltransferase complex subunit pseudogene 8 		ENST00000445117 (OSTCP8-001) 33968071-33968518 processed_pseudogene
ENSG00000230925 (RP11-176F3.7)
 ENST00000414426 (RP11-176F3.7-001) 33909609-33911122 antisense
ENSG00000235481 (UBE2R2-AS1)
UBE2R2 antisense RNA 1 		ENST00000454429 (UBE2R2-AS1-001) 33785950-33818795 antisense
ENSG00000238886 (SNORD121A)
small nucleolar RNA, C/D box 121A 		ENST00000459386 (SNORD121A-201) 33952769-33952850 snoRNA
ENSG00000251748 (RNU4ATAC11P)
RNA, U4atac small nuclear 11, pseudogene 		ENST00000515939 (RNU4ATAC11P-201) 33868540-33868665 snRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006AS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036241-ENSMUSG00000028433 CGP 10090 4:41135743-41275144
GeneTranscriptPositionBiotype
ENSMUSG00000028433 (Ubap2)
ubiquitin-associated protein 2 		ENSMUST00000030143 (Ubap2-201) 41194316-41275135 protein_coding
ENSMUST00000108068 (Ubap2-001) 41194313-41275144 protein_coding
ENSMUST00000132499 (Ubap2-003) 41221592-41275116 processed_transcript
ENSMUST00000134782 (Ubap2-002) 41221589-41251619 protein_coding
ENSMUST00000135323 (Ubap2-006) 41206895-41213828 protein_coding
ENSMUST00000136057 (Ubap2-005) 41195193-41195765 protein_coding
ENSMUST00000140662 (Ubap2-007) 41274066-41275127 processed_transcript
ENSMUST00000143552 (Ubap2-004) 41199218-41200077 processed_transcript
ENSMUSG00000036241 (Ube2r2)
ubiquitin-conjugating enzyme E2R 2 		ENSMUST00000040008 (Ube2r2-001) 41135743-41193380 protein_coding
ENSMUST00000123642 (Ube2r2-003) 41188888-41191036 retained_intron
ENSMUST00000129874 (Ube2r2-002) 41182920-41190823 retained_intron
ENSMUSG00000081866 (Gm12401)
predicted gene 12401 		ENSMUST00000118435 (Gm12401-001) 41252617-41252844 processed_pseudogene
ENSMUSG00000082186 (Gm12403)
predicted gene 12403 		ENSMUST00000121384 (Gm12403-001) 41168646-41169604 processed_pseudogene
ENSMUSG00000087730 (Gm24650)
predicted gene, 24650 		ENSMUST00000157105 (Gm24650-201) 41172742-41172844 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006AS_0001ENSG00000107341ENST00000263228ENSG00000137073ENST00000360802ENST00000379225ENST00000379235ENST00000379238ENST00000379239ENST00000412543ENST00000421278ENST00000459988ENST00000462799ENST00000474372ENST00000480885ENST00000488443ENST00000539807ENSG00000200834ENST00000363964ENSG00000226801ENST00000445117ENSG00000230925ENST00000414426ENSG00000235481ENST00000454429ENSG00000238886ENST00000459386ENSG00000251748ENST00000515939CIL_0006AS_0002ENSMUSG00000028433ENSMUST00000030143ENSMUST00000108068ENSMUST00000132499ENSMUST00000134782ENSMUST00000135323ENSMUST00000136057ENSMUST00000140662ENSMUST00000143552ENSMUSG00000036241ENSMUST00000040008ENSMUST00000123642ENSMUST00000129874ENSMUSG00000081866ENSMUST00000118435ENSMUSG00000082186ENSMUST00000121384ENSMUSG00000087730ENSMUST00000157105
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006AS_0001ENSG00000107341ENST00000263228ENSG00000137073ENST00000360802ENST00000379238ENST00000379239ENST00000412543ENST00000421278ENST00000459988ENST00000462799ENST00000480885ENST00000539807ENSG00000200834ENST00000363964ENSG00000226801ENST00000445117ENSG00000230925ENST00000414426ENSG00000235481ENST00000454429ENSG00000238886ENST00000459386ENSG00000251748ENST00000515939CIL_0006AS_0002ENSMUSG00000028433ENSMUST00000030143ENSMUST00000108068ENSMUST00000132499ENSMUST00000134782ENSMUSG00000036241ENSMUST00000040008ENSMUST00000123642ENSMUST00000129874ENSMUSG00000081866ENSMUST00000118435ENSMUSG00000082186ENSMUST00000121384ENSMUSG00000087730ENSMUST00000157105
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107341 ENST00000263228 26.464±0.00 13.601±0.00 4.180±0.00 13.758±7.42 12.159±3.59 15.226±9.10 8.679±6.21 9.268±3.53 8.703±3.51 15.412±11.01 18.869±12.72 14.499±5.97 18.688±7.13 46.724±15.67
ENSG00000137073 ENST00000360802 N/A N/A 1.059±0.00 N/A N/A N/A N/A N/A N/A N/A 2.208±0.00 N/A 3.051±0.00 N/A
ENST00000379225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379238 5.931±0.00 3.900±0.00 N/A 3.842±0.00 3.108±2.11 2.159±0.27 3.813±3.34 2.782±1.36 1.266±0.26 1.336±0.74 18.347±0.00 4.234±2.31 6.085±3.45 20.575±7.93
ENST00000379239 N/A 2.356±0.00 N/A N/A N/A N/A N/A 2.001±0.00 0.358±0.00 2.294±0.00 N/A 2.370±0.00 1.970±0.66 N/A
ENST00000412543 N/A N/A 1.580±0.00 2.125±0.00 3.198±0.00 N/A 1.826±0.00 2.038±0.00 N/A 3.182±0.00 N/A 4.744±2.67 12.097±0.00 38.293±0.00
ENST00000421278 N/A N/A N/A 6.207±0.00 N/A N/A N/A N/A 10.617±0.00 N/A 8.120±0.00 N/A N/A N/A
ENST00000459988 N/A N/A N/A N/A N/A 1.480±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462799 N/A N/A N/A N/A N/A N/A N/A 12.793±0.00 N/A N/A N/A N/A N/A N/A
ENST00000474372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480885 N/A N/A 0.679±0.00 N/A N/A 0.782±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.524±0.00 N/A N/A
ENSG00000200834 ENST00000363964 0.201±0.00 1.413±0.00 242.838±0.00 N/A 1558.490±0.00 N/A N/A N/A N/A N/A N/A 2.035±0.00 N/A N/A
ENSG00000226801 ENST00000445117 0.060±0.00 0.325±0.00 N/A 0.147±0.01 1.437±0.00 0.371±0.34 0.054±0.00 N/A 0.575±0.00 1.045±0.00 3.077±0.00 N/A N/A 0.327±0.00
ENSG00000230925 ENST00000414426 0.094±0.00 0.320±0.00 0.684±0.00 0.286±0.00 0.463±0.00 0.121±0.08 0.115±0.00 0.284±0.00 0.083±0.02 0.139±0.00 N/A 0.103±0.05 N/A 0.166±0.13
ENSG00000235481 ENST00000454429 0.246±0.00 N/A N/A N/A 0.079±0.00 N/A 0.046±0.00 0.284±0.00 N/A 0.359±0.21 0.178±0.00 0.186±0.00 0.135±0.00 6.435±4.74
ENSG00000238886 ENST00000459386 0.291±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251748 ENST00000515939 N/A 1.007±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.368±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028433 ENSMUST00000030143 9.507±1.48 17.309±9.10 9.136±2.13 10.573±1.82 9.830±4.08 10.164±2.04 7.415±3.53 8.501±1.30 6.320±4.08 7.987±1.74 18.957±1.71 14.272±3.32 21.633±12.44 44.023±18.39
ENSMUST00000108068 2.009±0.08 N/A N/A 3.077±0.00 N/A N/A 2.695±0.00 N/A 1.923±0.00 N/A 3.481±0.00 3.173±0.00 2.114±0.00 22.648±8.76
ENSMUST00000132499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.827±0.00 84.307±39.12 567.725±0.00
ENSMUST00000134782 N/A N/A N/A 12.946±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036241 ENSMUST00000040008 30.618±2.20 33.115±7.12 24.617±0.41 10.319±4.85 27.006±3.48 36.352±4.07 25.769±2.18 34.451±2.82 21.060±7.66 22.222±2.81 24.009±3.79 26.645±13.03 15.810±7.72 7.682±3.42
ENSMUST00000123642 N/A N/A 58.086±5.36 51.402±9.74 N/A N/A N/A N/A 29.947±4.22 N/A 31.172±3.34 52.618±31.66 71.771±40.69 13.819±0.00
ENSMUST00000129874 N/A N/A N/A 14.014±0.00 N/A N/A N/A N/A N/A N/A N/A 23.117±8.24 33.311±9.04 19.698±0.00
ENSMUSG00000081866 ENSMUST00000118435 N/A N/A 0.136±0.00 0.461±0.15 N/A N/A N/A N/A 0.728±0.00 N/A N/A N/A 0.500±0.03 N/A
ENSMUSG00000082186 ENSMUST00000121384 0.541±0.18 0.162±0.09 0.260±0.04 0.489±0.25 0.345±0.09 0.182±0.11 0.209±0.13 0.261±0.14 0.348±0.14 0.292±0.14 0.075±0.03 0.387±0.20 0.239±0.14 4.508±2.73
ENSMUSG00000087730 ENSMUST00000157105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.256±0.00 N/A

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