C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006B3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137073-ENSG00000198876 CGP 9606 9:33921693-34127399
GeneTranscriptPositionBiotype
ENSG00000137073 (UBAP2)
ubiquitin associated protein 2 		ENST00000360802 (UBAP2-201) 33921693-34048949 protein_coding
ENST00000379225 (UBAP2-008) 33935322-33948966 protein_coding
ENST00000379235 (UBAP2-007) 33921859-33928835 protein_coding
ENST00000379238 (UBAP2-001) 33921693-34048901 protein_coding
ENST00000379239 (UBAP2-202) 33921693-33934364 protein_coding
ENST00000412543 (UBAP2-005) 33944515-34048949 protein_coding
ENST00000421278 (UBAP2-004) 33948374-33989043 protein_coding
ENST00000459988 (UBAP2-009) 33996478-34048887 processed_transcript
ENST00000462799 (UBAP2-006) 33948382-33963782 processed_transcript
ENST00000474372 (UBAP2-002) 33923825-33934354 processed_transcript
ENST00000480885 (UBAP2-010) 33994481-34048872 processed_transcript
ENST00000488443 (UBAP2-003) 33927027-33941711 nonsense_mediated_decay
ENST00000539807 (UBAP2-203) 33922412-34048949 protein_coding
ENSG00000198876 (DCAF12)
DDB1 and CUL4 associated factor 12 		ENST00000361264 (DCAF12-001) 34086387-34126773 protein_coding
ENST00000396990 (DCAF12-004) 34098384-34127399 protein_coding
ENST00000450964 (DCAF12-003) 34098488-34125727 protein_coding
ENST00000463286 (DCAF12-002) 34107361-34125703 processed_transcript
ENST00000466402 (DCAF12-005) 34089412-34093779 processed_transcript
ENSG00000222259 (RN7SKP114)
RNA, 7SK small nuclear pseudogene 114 		ENST00000410327 (RN7SKP114-201) 34049966-34050244 misc_RNA
ENSG00000224802 (TUBB4BP2)
tubulin, beta 4B class IVb pseudogene 2 		ENST00000454125 (TUBB4BP2-001) 34109171-34109968 processed_pseudogene
ENSG00000226801 (OSTCP8)
oligosaccharyltransferase complex subunit pseudogene 8 		ENST00000445117 (OSTCP8-001) 33968071-33968518 processed_pseudogene
ENSG00000228352 (RP11-537H15.3)
 ENST00000448245 (RP11-537H15.3-002) 34084332-34096225 antisense
ENSG00000238886 (SNORD121A)
small nucleolar RNA, C/D box 121A 		ENST00000459386 (SNORD121A-201) 33952769-33952850 snoRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006B3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028433-ENSMUSG00000028436 CGP 10090 4:41194313-41314889
GeneTranscriptPositionBiotype
ENSMUSG00000028433 (Ubap2)
ubiquitin-associated protein 2 		ENSMUST00000030143 (Ubap2-201) 41194316-41275135 protein_coding
ENSMUST00000108068 (Ubap2-001) 41194313-41275144 protein_coding
ENSMUST00000132499 (Ubap2-003) 41221592-41275116 processed_transcript
ENSMUST00000134782 (Ubap2-002) 41221589-41251619 protein_coding
ENSMUST00000135323 (Ubap2-006) 41206895-41213828 protein_coding
ENSMUST00000136057 (Ubap2-005) 41195193-41195765 protein_coding
ENSMUST00000140662 (Ubap2-007) 41274066-41275127 processed_transcript
ENSMUST00000143552 (Ubap2-004) 41199218-41200077 processed_transcript
ENSMUSG00000028436 (Dcaf12)
DDB1 and CUL4 associated factor 12 		ENSMUST00000030145 (Dcaf12-001) 41291300-41314889 protein_coding
ENSMUSG00000065873 (n-R5s183)
nuclear encoded rRNA 5S 183 		ENSMUST00000083939 (n-R5s183-201) 41303158-41303272 rRNA
ENSMUSG00000081866 (Gm12401)
predicted gene 12401 		ENSMUST00000118435 (Gm12401-001) 41252617-41252844 processed_pseudogene
ENSMUSG00000087938 (Gm26049)
predicted gene, 26049 		ENSMUST00000157313 (Gm26049-201) 41312091-41312198 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006B3_0001ENSG00000137073ENST00000360802ENST00000379225ENST00000379235ENST00000379238ENST00000379239ENST00000412543ENST00000421278ENST00000459988ENST00000462799ENST00000474372ENST00000480885ENST00000488443ENST00000539807ENSG00000198876ENST00000361264ENST00000396990ENST00000450964ENST00000463286ENST00000466402ENSG00000222259ENST00000410327ENSG00000224802ENST00000454125ENSG00000226801ENST00000445117ENSG00000228352ENST00000448245ENSG00000238886ENST00000459386CIL_0006B3_0002ENSMUSG00000028433ENSMUST00000030143ENSMUST00000108068ENSMUST00000132499ENSMUST00000134782ENSMUST00000135323ENSMUST00000136057ENSMUST00000140662ENSMUST00000143552ENSMUSG00000028436ENSMUST00000030145ENSMUSG00000065873ENSMUST00000083939ENSMUSG00000081866ENSMUST00000118435ENSMUSG00000087938ENSMUST00000157313
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006B3_0001ENSG00000137073ENST00000360802ENST00000379238ENST00000379239ENST00000412543ENST00000421278ENST00000459988ENST00000462799ENST00000480885ENST00000539807ENSG00000198876ENST00000361264ENSG00000222259ENST00000410327ENSG00000224802ENST00000454125ENSG00000226801ENST00000445117ENSG00000228352ENST00000448245ENSG00000238886ENST00000459386CIL_0006B3_0002ENSMUSG00000028433ENSMUST00000030143ENSMUST00000108068ENSMUST00000132499ENSMUST00000134782ENSMUSG00000028436ENSMUST00000030145ENSMUSG00000065873ENSMUST00000083939ENSMUSG00000081866ENSMUST00000118435ENSMUSG00000087938ENSMUST00000157313
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137073 ENST00000360802 N/A N/A 1.059±0.00 N/A N/A N/A N/A N/A N/A N/A 2.208±0.00 N/A 3.051±0.00 N/A
ENST00000379225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379238 5.931±0.00 3.900±0.00 N/A 3.842±0.00 3.108±2.11 2.159±0.27 3.813±3.34 2.782±1.36 1.266±0.26 1.336±0.74 18.347±0.00 4.234±2.31 6.085±3.45 20.575±7.93
ENST00000379239 N/A 2.356±0.00 N/A N/A N/A N/A N/A 2.001±0.00 0.358±0.00 2.294±0.00 N/A 2.370±0.00 1.970±0.66 N/A
ENST00000412543 N/A N/A 1.580±0.00 2.125±0.00 3.198±0.00 N/A 1.826±0.00 2.038±0.00 N/A 3.182±0.00 N/A 4.744±2.67 12.097±0.00 38.293±0.00
ENST00000421278 N/A N/A N/A 6.207±0.00 N/A N/A N/A N/A 10.617±0.00 N/A 8.120±0.00 N/A N/A N/A
ENST00000459988 N/A N/A N/A N/A N/A 1.480±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462799 N/A N/A N/A N/A N/A N/A N/A 12.793±0.00 N/A N/A N/A N/A N/A N/A
ENST00000474372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480885 N/A N/A 0.679±0.00 N/A N/A 0.782±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.524±0.00 N/A N/A
ENSG00000198876 ENST00000361264 7.277±0.00 5.155±0.00 2.181±0.00 3.504±1.75 6.421±2.00 5.707±1.91 3.283±2.68 6.470±1.66 4.558±0.68 8.738±5.12 4.167±3.79 10.903±3.68 13.113±0.94 35.097±0.52
ENST00000396990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222259 ENST00000410327 0.085±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.218±0.00
ENSG00000224802 ENST00000454125 N/A 0.255±0.00 N/A 0.052±0.00 0.150±0.12 N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A 0.064±0.00
ENSG00000226801 ENST00000445117 0.060±0.00 0.325±0.00 N/A 0.147±0.01 1.437±0.00 0.371±0.34 0.054±0.00 N/A 0.575±0.00 1.045±0.00 3.077±0.00 N/A N/A 0.327±0.00
ENSG00000228352 ENST00000448245 0.021±0.00 0.298±0.00 N/A 0.087±0.00 0.042±0.00 0.098±0.02 0.169±0.00 0.021±0.00 0.090±0.00 0.112±0.00 N/A 0.301±0.13 0.065±0.02 0.489±0.30
ENSG00000238886 ENST00000459386 0.291±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028433 ENSMUST00000030143 9.507±1.48 17.309±9.10 9.136±2.13 10.573±1.82 9.830±4.08 10.164±2.04 7.415±3.53 8.501±1.30 6.320±4.08 7.987±1.74 18.957±1.71 14.272±3.32 21.633±12.44 44.023±18.39
ENSMUST00000108068 2.009±0.08 N/A N/A 3.077±0.00 N/A N/A 2.695±0.00 N/A 1.923±0.00 N/A 3.481±0.00 3.173±0.00 2.114±0.00 22.648±8.76
ENSMUST00000132499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.827±0.00 84.307±39.12 567.725±0.00
ENSMUST00000134782 N/A N/A N/A 12.946±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028436 ENSMUST00000030145 16.832±3.24 17.664±3.41 17.992±1.50 16.811±8.06 17.484±1.02 19.336±3.47 11.851±1.66 15.569±0.39 18.621±10.48 17.669±0.32 10.118±0.48 22.594±3.64 23.196±4.92 23.879±12.49
ENSMUSG00000065873 ENSMUST00000083939 N/A N/A N/A N/A N/A N/A N/A N/A 2432.995±934.16 N/A N/A 41.771±0.00 32.234±0.00 N/A
ENSMUSG00000081866 ENSMUST00000118435 N/A N/A 0.136±0.00 0.461±0.15 N/A N/A N/A N/A 0.728±0.00 N/A N/A N/A 0.500±0.03 N/A
ENSMUSG00000087938 ENSMUST00000157313 N/A N/A N/A 37.229±0.00 N/A N/A N/A N/A N/A N/A N/A 53.320±4.45 112.984±46.97 N/A

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