C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin associated protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379238 UBAP2-001 ENSG00000137073 9606 - 9:33921693-34048901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379238
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379238 5.931±0.00 3.900±0.00 3.842±0.00 3.108±2.11 2.159±0.27 3.813±3.34 2.782±1.36 1.266±0.26 1.336±0.74 18.347±0.00 4.234±2.31 6.085±3.45 20.575±7.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AS CIL_0006AS_0001 CGP 9:33817567-34048949
CIL_0006B3 CIL_0006B3_0001 CGP 9:33921693-34127399

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030143 Ubap2-201 protein_coding Mus_musculus 0 3350
ENSMUST00000108068 Ubap2-001 protein_coding Mus_musculus 0 3350
ENSMUST00000132499 Ubap2-003 processed_transcript Mus_musculus 0 673
ENSMUST00000134782 Ubap2-002 protein_coding Mus_musculus 0 673
ENSMUST00000135323 Ubap2-006 protein_coding Mus_musculus 0 545
ENSMUST00000136057 Ubap2-005 protein_coding Mus_musculus 0 316
ENSMUST00000143552 Ubap2-004 processed_transcript Mus_musculus 0 261
ENSDART00000084241 UBAP2 (1 of 2)-201 protein_coding Danio_rerio 2e-25 122
ENSDART00000136234 UBAP2 (1 of 2)-001 protein_coding Danio_rerio 2e-25 122
ENSMUST00000140662 Ubap2-007 processed_transcript Mus_musculus 5e-17 95
ENSDART00000137104 UBAP2 (1 of 2)-002 protein_coding Danio_rerio 6e-16 92

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