C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 38
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137075 RNF38 9606 - 9:36336396-36487548 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000259605 RNF38-001 36336396-36400216 protein_coding
  ENST00000350199 RNF38-201 36336404-36400923 protein_coding
  ENST00000353739 RNF38-002 36336396-36400299 protein_coding
  ENST00000357058 RNF38-202 36336404-36400923 protein_coding
  ENST00000377877 RNF38-003 36339581-36400872 protein_coding
  ENST00000377885 RNF38-203 36336404-36401198 protein_coding
  ENST00000484621 RNF38-004 36369723-36401198 processed_transcript
  ENST00000488058 RNF38-006 36376008-36487548 processed_transcript
  ENST00000491349 RNF38-005 36356340-36401196 processed_transcript
  ENST00000611646 RNF38-204 36336404-36400299 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259605ENST00000350199ENST00000353739ENST00000357058ENST00000377877ENST00000377885
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259605 N/A N/A 2.234±0.00 5.139±0.00 1.803±0.00 1.008±0.00 1.402±0.00 N/A N/A 1.701±0.00 0.587±0.00 4.007±0.00 N/A N/A
ENST00000350199 6.347±0.00 4.220±0.00 N/A 6.705±0.00 6.676±0.00 5.973±4.11 4.222±0.00 6.768±0.00 1.154±0.00 6.707±0.00 3.424±0.00 7.338±3.43 5.221±0.94 3.571±0.00
ENST00000353739 N/A N/A N/A N/A N/A 1.133±0.00 N/A N/A 2.892±2.61 N/A N/A N/A 1.873±0.00 8.582±0.00
ENST00000357058 3.910±0.00 2.584±0.00 N/A 1.952±0.00 1.192±0.00 1.653±0.00 0.815±0.00 N/A 1.060±0.00 1.854±0.00 N/A 1.682±0.00 N/A 9.696±0.00
ENST00000377877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.582±10.39
ENST00000377885 N/A N/A 1.137±0.00 2.205±0.00 1.660±0.00 N/A 0.826±0.00 0.921±0.16 N/A 1.946±0.00 0.698±0.00 1.011±0.00 1.703±0.00 3.835±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K4 CIL_0006K4_0001 CGP 9:36214441-36487548
CIL_0006K5 CIL_0006K5_0001 CGP 9:36336396-36677683

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0008584 IEA male gonad development
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0036126 IEA sperm flagellum
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062055 RNF38 ring finger protein 38 protein_coding Danio_rerio
ENSMUSG00000035696 Rnf38 ring finger protein 38 protein_coding Mus_musculus

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