C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006K4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000159921-ENSG00000137075 CGP 9606 9:36214441-36487548
GeneTranscriptPositionBiotype
ENSG00000122705 (CLTA)
clathrin, light chain A 		ENST00000242285 (CLTA-001) 36190937-36212059 protein_coding
ENST00000345519 (CLTA-002) 36190923-36212056 protein_coding
ENST00000396603 (CLTA-004) 36190963-36212059 protein_coding
ENST00000433436 (CLTA-201) 36190856-36212061 protein_coding
ENST00000464497 (CLTA-008) 36190931-36304781 nonsense_mediated_decay
ENST00000466396 (CLTA-005) 36190963-36211784 protein_coding
ENST00000470744 (CLTA-003) 36190932-36212058 protein_coding
ENST00000493185 (CLTA-007) 36191165-36212057 nonsense_mediated_decay
ENST00000538225 (CLTA-202) 36190856-36212061 protein_coding
ENST00000540080 (CLTA-203) 36190856-36212061 protein_coding
ENSG00000137075 (RNF38)
ring finger protein 38 		ENST00000259605 (RNF38-001) 36336396-36400216 protein_coding
ENST00000350199 (RNF38-201) 36336404-36400923 protein_coding
ENST00000353739 (RNF38-002) 36336396-36400299 protein_coding
ENST00000357058 (RNF38-202) 36336404-36400923 protein_coding
ENST00000377877 (RNF38-003) 36339581-36400872 protein_coding
ENST00000377885 (RNF38-203) 36336404-36401198 protein_coding
ENST00000484621 (RNF38-004) 36369723-36401198 processed_transcript
ENST00000488058 (RNF38-006) 36376008-36487548 processed_transcript
ENST00000491349 (RNF38-005) 36356340-36401196 processed_transcript
ENST00000611646 (RNF38-204) 36336404-36400299 protein_coding
ENSG00000159921 (GNE)
glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 		ENST00000377902 (GNE-001) 36217190-36258499 protein_coding
ENST00000396594 (GNE-003) 36214441-36277056 protein_coding
ENST00000447283 (GNE-005) 36217189-36258329 protein_coding
ENST00000539208 (GNE-002) 36217152-36258445 protein_coding
ENST00000539815 (GNE-201) 36214444-36249396 protein_coding
ENST00000543356 (GNE-004) 36216943-36277042 protein_coding
ENSG00000215283 (HMGB3P24)
high mobility group box 3 pseudogene 24 		ENST00000433260 (HMGB3P24-001) 36303499-36304924 processed_pseudogene
ENSG00000222760 (RNU4-53P)
RNA, U4 small nuclear 53, pseudogene 		ENST00000410828 (RNU4-53P-201) 36267783-36267922 snRNA
CIL_0006K4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028479-ENSMUSG00000035696 CGP 10090 4:44034075-44233789
GeneTranscriptPositionBiotype
ENSMUSG00000028479 (Gne)
glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 		ENSMUST00000030201 (Gne-001) 44034075-44084177 protein_coding
ENSMUST00000102936 (Gne-002) 44036826-44072778 protein_coding
ENSMUST00000128439 (Gne-004) 44060103-44073017 protein_coding
ENSMUST00000133709 (Gne-006) 44045955-44072624 nonsense_mediated_decay
ENSMUST00000140724 (Gne-005) 44060112-44073018 protein_coding
ENSMUST00000144985 (Gne-003) 44059868-44083923 protein_coding
ENSMUST00000172514 (Gne-014) 44059700-44084167 retained_intron
ENSMUST00000172533 (Gne-008) 44036830-44066920 nonsense_mediated_decay
ENSMUST00000173234 (Gne-009) 44036958-44066960 protein_coding
ENSMUST00000173274 (Gne-011) 44052875-44067061 protein_coding
ENSMUST00000173383 (Gne-010) 44059991-44072602 protein_coding
ENSMUST00000173569 (Gne-012) 44059972-44072736 processed_transcript
ENSMUST00000173976 (Gne-013) 44055305-44063173 retained_intron
ENSMUST00000174522 (Gne-007) 44036810-44055297 nonsense_mediated_decay
ENSMUSG00000035696 (Rnf38)
ring finger protein 38 		ENSMUST00000045793 (Rnf38-017) 44126215-44168339 protein_coding
ENSMUST00000098098 (Rnf38-004) 44126210-44167608 protein_coding
ENSMUST00000102934 (Rnf38-001) 44126215-44167951 protein_coding
ENSMUST00000107836 (Rnf38-006) 44129420-44158943 protein_coding
ENSMUST00000123844 (Rnf38-014) 44149114-44228312 processed_transcript
ENSMUST00000128426 (Rnf38-013) 44142295-44168287 protein_coding
ENSMUST00000129621 (Rnf38-012) 44149143-44167922 processed_transcript
ENSMUST00000136730 (Rnf38-003) 44129424-44167648 nonsense_mediated_decay
ENSMUST00000137194 (Rnf38-007) 44149107-44167535 processed_transcript
ENSMUST00000143337 (Rnf38-011) 44142393-44168005 protein_coding
ENSMUST00000145378 (Rnf38-009) 44129508-44139586 processed_transcript
ENSMUST00000145760 (Rnf38-016) 44142349-44168252 protein_coding
ENSMUST00000147302 (Rnf38-002) 44158973-44167492 processed_transcript
ENSMUST00000148869 (Rnf38-010) 44129506-44138952 processed_transcript
ENSMUST00000152216 (Rnf38-008) 44138466-44139666 processed_transcript
ENSMUST00000153116 (Rnf38-015) 44152434-44233789 processed_transcript
ENSMUST00000153384 (Rnf38-005) 44147484-44168283 processed_transcript
ENSMUSG00000084274 (Gm12504)
predicted pseudogene 12504 		ENSMUST00000120860 (Gm12504-002) 44121893-44124123 processed_transcript
ENSMUST00000148026 (Gm12504-001) 44123238-44123543 transcribed_processed_pseudogene
ENSMUSG00000087326 (Gm12503)
predicted gene 12503 		ENSMUST00000146576 (Gm12503-001) 44092632-44109311 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006K4_0001ENSG00000122705ENST00000242285ENST00000345519ENST00000396603ENST00000433436ENST00000464497ENST00000466396ENST00000470744ENST00000493185ENST00000538225ENST00000540080ENSG00000137075ENST00000259605ENST00000350199ENST00000353739ENST00000357058ENST00000377877ENST00000377885ENST00000484621ENST00000488058ENST00000491349ENST00000611646ENSG00000159921ENST00000377902ENST00000396594ENST00000447283ENST00000539208ENST00000539815ENST00000543356ENSG00000215283ENST00000433260ENSG00000222760ENST00000410828CIL_0006K4_0002ENSMUSG00000028479ENSMUST00000030201ENSMUST00000102936ENSMUST00000128439ENSMUST00000133709ENSMUST00000140724ENSMUST00000144985ENSMUST00000172514ENSMUST00000172533ENSMUST00000173234ENSMUST00000173274ENSMUST00000173383ENSMUST00000173569ENSMUST00000173976ENSMUST00000174522ENSMUSG00000035696ENSMUST00000045793ENSMUST00000098098ENSMUST00000102934ENSMUST00000107836ENSMUST00000123844ENSMUST00000128426ENSMUST00000129621ENSMUST00000136730ENSMUST00000137194ENSMUST00000143337ENSMUST00000145378ENSMUST00000145760ENSMUST00000147302ENSMUST00000148869ENSMUST00000152216ENSMUST00000153116ENSMUST00000153384ENSMUSG00000084274ENSMUST00000120860ENSMUST00000148026ENSMUSG00000087326ENSMUST00000146576
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006K4_0001ENSG00000122705ENST00000242285ENST00000345519ENST00000396603ENST00000466396ENST00000470744ENST00000493185ENST00000538225ENST00000540080ENSG00000137075ENST00000259605ENST00000350199ENST00000353739ENST00000357058ENST00000377877ENST00000377885ENSG00000159921ENST00000377902ENST00000396594ENST00000539208ENST00000539815ENST00000543356ENSG00000215283ENST00000433260ENSG00000222760ENST00000410828CIL_0006K4_0002ENSMUSG00000028479ENSMUST00000030201ENSMUST00000102936ENSMUST00000140724ENSMUST00000172533ENSMUST00000173234ENSMUST00000173274ENSMUST00000173569ENSMUST00000174522ENSMUSG00000035696ENSMUST00000045793ENSMUST00000098098ENSMUST00000102934ENSMUST00000107836ENSMUST00000128426ENSMUST00000145378ENSMUSG00000084274ENSMUST00000120860ENSMUST00000148026ENSMUSG00000087326ENSMUST00000146576
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122705 ENST00000242285 N/A N/A N/A 7.063±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000345519 82.256±0.00 90.324±0.00 7.000±0.00 27.007±17.00 53.721±32.62 58.590±43.02 13.241±9.65 64.618±47.19 26.702±16.35 45.082±34.69 9.142±6.38 144.392±80.09 271.296±71.58 107.765±11.66
ENST00000396603 N/A N/A N/A 22.296±11.57 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466396 N/A N/A N/A 83.150±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470744 N/A N/A N/A 4.904±0.00 N/A N/A N/A N/A N/A N/A 9.085±0.00 N/A N/A N/A
ENST00000493185 N/A 17.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.473±0.00
ENST00000538225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.590±0.00 N/A N/A N/A
ENST00000540080 N/A N/A N/A N/A N/A N/A N/A N/A 11.363±0.00 N/A N/A N/A N/A N/A
ENSG00000137075 ENST00000259605 N/A N/A 2.234±0.00 5.139±0.00 1.803±0.00 1.008±0.00 1.402±0.00 N/A N/A 1.701±0.00 0.587±0.00 4.007±0.00 N/A N/A
ENST00000350199 6.347±0.00 4.220±0.00 N/A 6.705±0.00 6.676±0.00 5.973±4.11 4.222±0.00 6.768±0.00 1.154±0.00 6.707±0.00 3.424±0.00 7.338±3.43 5.221±0.94 3.571±0.00
ENST00000353739 N/A N/A N/A N/A N/A 1.133±0.00 N/A N/A 2.892±2.61 N/A N/A N/A 1.873±0.00 8.582±0.00
ENST00000357058 3.910±0.00 2.584±0.00 N/A 1.952±0.00 1.192±0.00 1.653±0.00 0.815±0.00 N/A 1.060±0.00 1.854±0.00 N/A 1.682±0.00 N/A 9.696±0.00
ENST00000377877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.582±10.39
ENST00000377885 N/A N/A 1.137±0.00 2.205±0.00 1.660±0.00 N/A 0.826±0.00 0.921±0.16 N/A 1.946±0.00 0.698±0.00 1.011±0.00 1.703±0.00 3.835±0.09
ENST00000484621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000159921 ENST00000377902 N/A N/A N/A N/A N/A 3.228±0.00 0.229±0.00 7.295±0.00 N/A N/A N/A 5.415±0.00 N/A N/A
ENST00000396594 N/A 2.633±0.00 1.093±0.00 N/A 4.761±2.78 5.301±1.28 N/A 9.808±2.70 10.742±10.08 1.518±0.00 1.390±0.96 7.106±1.29 3.733±1.71 N/A
ENST00000447283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539208 3.144±0.00 2.723±0.00 N/A N/A 2.481±0.00 N/A 1.190±0.00 N/A N/A N/A 1.458±0.03 N/A N/A N/A
ENST00000539815 N/A N/A 0.272±0.00 1.209±0.22 N/A 1.576±0.00 N/A 4.251±0.00 N/A N/A N/A 2.748±0.00 N/A N/A
ENST00000543356 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.253±0.00 N/A N/A N/A N/A
ENSG00000215283 ENST00000433260 0.224±0.00 0.981±0.00 N/A 0.331±0.22 0.410±0.28 0.066±0.00 0.022±0.00 0.120±0.00 0.134±0.00 0.145±0.00 0.215±0.00 0.289±0.16 0.114±0.07 0.626±0.16
ENSG00000222760 ENST00000410828 N/A 0.234±0.00 N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028479 ENSMUST00000030201 2.762±0.00 1.077±0.20 2.234±0.26 3.019±0.92 1.705±0.23 31.394±5.20 N/A 1.531±0.46 2.060±0.79 2.665±0.18 0.405±0.00 1.863±0.40 2.336±0.75 0.157±0.00
ENSMUST00000102936 3.538±0.35 2.032±0.40 2.861±0.41 3.993±3.09 2.245±0.79 13.917±0.00 0.680±0.00 2.620±0.39 5.064±1.06 4.408±0.28 0.838±0.23 3.437±1.40 9.133±5.05 0.378±0.20
ENSMUST00000128439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.889±0.00 N/A
ENSMUST00000144985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172533 N/A N/A N/A N/A 2.917±0.00 29.450±5.08 0.740±0.00 N/A 5.018±1.69 N/A N/A 1.808±0.08 3.118±0.00 0.229±0.00
ENSMUST00000173234 3.510±1.44 2.711±0.33 N/A N/A 3.326±0.28 58.275±12.11 1.444±0.34 3.250±0.59 10.842±2.10 4.992±0.38 0.421±0.00 4.220±1.08 2.060±0.00 0.291±0.02
ENSMUST00000173274 N/A N/A N/A N/A 3.280±0.00 N/A 2.513±0.28 N/A 6.003±2.24 N/A 0.944±0.00 5.852±0.52 12.053±3.89 0.834±0.00
ENSMUST00000173383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173569 N/A 5.202±1.90 N/A N/A 3.034±0.00 N/A N/A N/A N/A N/A N/A 4.658±1.31 N/A N/A
ENSMUST00000173976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174522 N/A 2.723±0.00 N/A N/A N/A 27.817±3.80 N/A 2.524±0.00 6.854±1.19 N/A 0.676±0.15 3.599±1.38 14.142±3.58 0.392±0.00
ENSMUSG00000035696 ENSMUST00000045793 5.657±1.87 21.410±5.94 8.638±0.00 13.141±4.54 19.230±4.23 14.185±6.43 4.129±2.77 5.683±1.51 3.109±1.24 17.382±4.84 0.847±0.22 41.359±4.76 3.551±1.51 N/A
ENSMUST00000098098 2.451±0.00 4.805±0.00 4.717±0.00 N/A 5.754±1.39 N/A 1.154±0.00 2.356±0.13 2.487±0.99 N/A 0.748±0.05 1.688±0.00 3.669±1.07 27.981±13.03
ENSMUST00000102934 N/A 2.897±0.00 3.362±0.28 6.790±0.00 N/A N/A N/A N/A 0.703±0.00 N/A 0.570±0.07 N/A N/A N/A
ENSMUST00000107836 N/A N/A N/A N/A 7.950±1.26 N/A 3.534±0.00 N/A N/A N/A N/A 21.150±0.00 N/A 186.051±102.66
ENSMUST00000123844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128426 12.021±0.00 N/A N/A 58.241±0.00 23.490±4.68 19.700±4.90 9.774±0.02 11.126±2.00 4.903±1.34 N/A N/A 56.766±7.44 N/A 216.263±29.58
ENSMUST00000129621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145378 N/A N/A N/A 7.661±0.00 N/A N/A N/A N/A N/A N/A N/A 24.278±0.00 25.781±1.27 178.791±0.00
ENSMUST00000145760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084274 ENSMUST00000120860 0.213±0.06 0.139±0.06 0.234±0.00 0.458±0.30 0.252±0.13 0.537±0.07 0.083±0.02 0.118±0.08 0.130±0.08 0.252±0.08 0.040±0.03 0.527±0.24 0.406±0.15 0.141±0.07
ENSMUST00000148026 0.182±0.00 0.495±0.05 N/A 0.289±0.00 N/A N/A N/A 0.157±0.00 0.456±0.20 0.848±0.00 0.107±0.00 3.007±1.33 1.856±0.71 0.469±0.26
ENSMUSG00000087326 ENSMUST00000146576 0.096±0.02 0.062±0.04 0.122±0.03 0.103±0.04 0.087±0.04 0.568±0.06 0.021±0.00 0.039±0.02 0.044±0.02 0.063±0.03 0.008±0.00 0.128±0.07 0.254±0.07 0.014±0.01

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