C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000259605 RNF38-001 ENSG00000137075 9606 - 9:36336396-36400216 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLungMuscleOvaryENST00000259605
Transcript ID Bladder Brain Breast Colon Heart Lung Muscle Ovary
ENST00000259605 2.234±0.00 5.139±0.00 1.803±0.00 1.008±0.00 1.402±0.00 1.701±0.00 0.587±0.00 4.007±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K4 CIL_0006K4_0001 CGP 9:36214441-36487548
CIL_0006K5 CIL_0006K5_0001 CGP 9:36336396-36677683

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0008584 IEA male gonad development
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0036126 IEA sperm flagellum
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045793 Rnf38-017 protein_coding Mus_musculus 0 3574
ENSMUST00000102934 Rnf38-001 protein_coding Mus_musculus 0 3574
ENSMUST00000098098 Rnf38-004 protein_coding Mus_musculus 0 3314
ENSMUST00000107836 Rnf38-006 protein_coding Mus_musculus 0 2374
ENSMUST00000136730 Rnf38-003 nonsense_mediated_decay Mus_musculus 0 1670
ENSMUST00000128426 Rnf38-013 protein_coding Mus_musculus 0 1179
ENSMUST00000145760 Rnf38-016 protein_coding Mus_musculus 0 1099
ENSMUST00000148869 Rnf38-010 processed_transcript Mus_musculus 0 1040
ENSMUST00000145378 Rnf38-009 processed_transcript Mus_musculus 0 1035
ENSMUST00000143337 Rnf38-011 protein_coding Mus_musculus 0 1033
ENSMUST00000137194 Rnf38-007 processed_transcript Mus_musculus 0 811
ENSMUST00000153384 Rnf38-005 processed_transcript Mus_musculus 0 680
ENSMUST00000123844 Rnf38-014 processed_transcript Mus_musculus 0 536
ENSMUST00000153116 Rnf38-015 processed_transcript Mus_musculus 0 488
ENSMUST00000129621 Rnf38-012 processed_transcript Mus_musculus 0 488
ENSMUST00000152216 Rnf38-008 processed_transcript Mus_musculus 0 222
ENSMUST00000177950 Rnf44-201 protein_coding Mus_musculus 3.9937e-43 182
ENSMUST00000128257 Rnf44-005 protein_coding Mus_musculus 3.9937e-43 182
ENSMUST00000150806 Rnf44-004 protein_coding Mus_musculus 3.9937e-43 182
ENSMUST00000134862 Rnf44-002 protein_coding Mus_musculus 3.9937e-43 182
ENSMUST00000037422 Rnf44-003 protein_coding Mus_musculus 3.9937e-43 182
ENSMUST00000125871 Rnf44-001 protein_coding Mus_musculus 3.9937e-43 182
ENSMUST00000147302 Rnf38-002 processed_transcript Mus_musculus 1e-32 147

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