C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350199 RNF38-201 ENSG00000137075 9606 - 9:36336404-36400923 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350199
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350199 6.347±0.00 4.220±0.00 6.705±0.00 6.676±0.00 5.973±4.11 4.222±0.00 6.768±0.00 1.154±0.00 6.707±0.00 3.424±0.00 7.338±3.43 5.221±0.94 3.571±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K4 CIL_0006K4_0001 CGP 9:36214441-36487548
CIL_0006K5 CIL_0006K5_0001 CGP 9:36336396-36677683

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045793 Rnf38-017 protein_coding Mus_musculus 0 3315
ENSMUST00000102934 Rnf38-001 protein_coding Mus_musculus 0 3315
ENSMUST00000098098 Rnf38-004 protein_coding Mus_musculus 0 3314
ENSMUST00000107836 Rnf38-006 protein_coding Mus_musculus 0 2374
ENSMUST00000136730 Rnf38-003 nonsense_mediated_decay Mus_musculus 0 1674
ENSMUST00000143337 Rnf38-011 protein_coding Mus_musculus 0 1284
ENSMUST00000128426 Rnf38-013 protein_coding Mus_musculus 0 1179
ENSMUST00000145760 Rnf38-016 protein_coding Mus_musculus 0 1099
ENSMUST00000148869 Rnf38-010 processed_transcript Mus_musculus 0 1040
ENSMUST00000145378 Rnf38-009 processed_transcript Mus_musculus 0 1035
ENSMUST00000153384 Rnf38-005 processed_transcript Mus_musculus 0 680
ENSMUST00000137194 Rnf38-007 processed_transcript Mus_musculus 0 553
ENSMUST00000123844 Rnf38-014 processed_transcript Mus_musculus 0 536
ENSMUST00000129621 Rnf38-012 processed_transcript Mus_musculus 0 488
ENSMUST00000153116 Rnf38-015 processed_transcript Mus_musculus 0 228
ENSMUST00000152216 Rnf38-008 processed_transcript Mus_musculus 0 222
ENSMUST00000177950 Rnf44-201 protein_coding Mus_musculus 3.9937e-43 182
ENSMUST00000128257 Rnf44-005 protein_coding Mus_musculus 3.9937e-43 182
ENSMUST00000150806 Rnf44-004 protein_coding Mus_musculus 3.9937e-43 182
ENSMUST00000134862 Rnf44-002 protein_coding Mus_musculus 3.9937e-43 182
ENSMUST00000037422 Rnf44-003 protein_coding Mus_musculus 3.9937e-43 182
ENSMUST00000125871 Rnf44-001 protein_coding Mus_musculus 3.9937e-43 182

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