C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 38
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035696 Rnf38 10090 - 4:44126210-44233789 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045793 Rnf38-017 44126215-44168339 protein_coding
  ENSMUST00000098098 Rnf38-004 44126210-44167608 protein_coding
  ENSMUST00000102934 Rnf38-001 44126215-44167951 protein_coding
  ENSMUST00000107836 Rnf38-006 44129420-44158943 protein_coding
  ENSMUST00000123844 Rnf38-014 44149114-44228312 processed_transcript
  ENSMUST00000128426 Rnf38-013 44142295-44168287 protein_coding
  ENSMUST00000129621 Rnf38-012 44149143-44167922 processed_transcript
  ENSMUST00000136730 Rnf38-003 44129424-44167648 nonsense_mediated_decay
  ENSMUST00000137194 Rnf38-007 44149107-44167535 processed_transcript
  ENSMUST00000143337 Rnf38-011 44142393-44168005 protein_coding
  ENSMUST00000145378 Rnf38-009 44129508-44139586 processed_transcript
  ENSMUST00000145760 Rnf38-016 44142349-44168252 protein_coding
  ENSMUST00000147302 Rnf38-002 44158973-44167492 processed_transcript
  ENSMUST00000148869 Rnf38-010 44129506-44138952 processed_transcript
  ENSMUST00000152216 Rnf38-008 44138466-44139666 processed_transcript
  ENSMUST00000153116 Rnf38-015 44152434-44233789 processed_transcript
  ENSMUST00000153384 Rnf38-005 44147484-44168283 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045793ENSMUST00000098098ENSMUST00000102934ENSMUST00000107836ENSMUST00000128426ENSMUST00000145378
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045793 5.657±1.87 21.410±5.94 8.638±0.00 13.141±4.54 19.230±4.23 14.185±6.43 4.129±2.77 5.683±1.51 3.109±1.24 17.382±4.84 0.847±0.22 41.359±4.76 3.551±1.51 N/A
ENSMUST00000098098 2.451±0.00 4.805±0.00 4.717±0.00 N/A 5.754±1.39 N/A 1.154±0.00 2.356±0.13 2.487±0.99 N/A 0.748±0.05 1.688±0.00 3.669±1.07 27.981±13.03
ENSMUST00000102934 N/A 2.897±0.00 3.362±0.28 6.790±0.00 N/A N/A N/A N/A 0.703±0.00 N/A 0.570±0.07 N/A N/A N/A
ENSMUST00000107836 N/A N/A N/A N/A 7.950±1.26 N/A 3.534±0.00 N/A N/A N/A N/A 21.150±0.00 N/A 186.051±102.66
ENSMUST00000128426 12.021±0.00 N/A N/A 58.241±0.00 23.490±4.68 19.700±4.90 9.774±0.02 11.126±2.00 4.903±1.34 N/A N/A 56.766±7.44 N/A 216.263±29.58
ENSMUST00000145378 N/A N/A N/A 7.661±0.00 N/A N/A N/A N/A N/A N/A N/A 24.278±0.00 25.781±1.27 178.791±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K4 CIL_0006K4_0002 CGP 4:44034075-44233789
CIL_0006K5 CIL_0006K5_0002 CGP 4:44126210-44364675

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0008584 IEA male gonad development
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0036126 IEA sperm flagellum

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062055 RNF38 ring finger protein 38 protein_coding Danio_rerio
ENSG00000137075 RNF38 ring finger protein 38 protein_coding Homo_sapiens

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