C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valyl-tRNA synthetase 2, mitochondrial
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000476162 VARS2-004 ENSG00000137411 9606 + 6:30919826-30926459 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENST00000476162
Transcript ID Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000476162 6.237±0.00 3.350±0.00 2.775±0.00 1.610±0.00 7.119±0.00 4.906±0.00 2.803±0.00 6.363±1.40 2.826±0.75 4.036±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164404 Vars2-004 nonsense_mediated_decay Mus_musculus 0 1877
ENSMUST00000165787 Vars2-003 retained_intron Mus_musculus 0 1195
ENSMUST00000043674 Vars2-001 protein_coding Mus_musculus 0 1195
ENSMUST00000168922 Vars2-002 nonsense_mediated_decay Mus_musculus 0 859
ENSMUST00000164295 Vars2-005 retained_intron Mus_musculus 0 477
ENSMUST00000168885 Vars2-010 retained_intron Mus_musculus 0 401
ENSMUST00000169093 Vars2-011 nonsense_mediated_decay Mus_musculus 0 377
ENSMUST00000170701 Vars2-006 retained_intron Mus_musculus 0 289
ENSMUST00000174129 Vars2-012 retained_intron Mus_musculus 0 268

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