C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: valyl-tRNA synthetase 2, mitochondrial (putative)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038838 Vars2 10090 - 17:35655634-35667592 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043674 Vars2-001 35655634-35667592 protein_coding
  ENSMUST00000164295 Vars2-005 35656627-35658416 retained_intron
  ENSMUST00000164404 Vars2-004 35656557-35663026 nonsense_mediated_decay
  ENSMUST00000164978 Vars2-007 35664446-35666733 retained_intron
  ENSMUST00000165144 Vars2-008 35666202-35667549 nonsense_mediated_decay
  ENSMUST00000165787 Vars2-003 35655655-35666263 retained_intron
  ENSMUST00000168885 Vars2-010 35660029-35661648 retained_intron
  ENSMUST00000168922 Vars2-002 35656390-35663484 nonsense_mediated_decay
  ENSMUST00000169093 Vars2-011 35659688-35661969 nonsense_mediated_decay
  ENSMUST00000170701 Vars2-006 35656743-35657517 retained_intron
  ENSMUST00000171536 Vars2-009 35666118-35667540 retained_intron
  ENSMUST00000174129 Vars2-012 35659556-35660050 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043674ENSMUST00000164295ENSMUST00000164404ENSMUST00000164978ENSMUST00000165787ENSMUST00000168885ENSMUST00000168922
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043674 6.578±2.58 11.749±4.24 4.096±0.77 6.112±0.20 7.624±3.19 6.230±1.46 4.666±1.30 6.930±1.62 5.167±1.53 6.674±0.43 2.396±0.31 7.475±3.44 2.711±1.35 1.365±0.28
ENSMUST00000164295 N/A 9.106±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.155±0.07 N/A
ENSMUST00000164978 N/A N/A N/A 9.931±0.00 N/A N/A N/A N/A N/A N/A N/A 22.841±0.00 6.130±0.75 N/A
ENSMUST00000165787 N/A N/A N/A 1.920±0.66 1.473±0.00 N/A N/A N/A N/A 3.049±0.52 N/A 1.804±0.21 1.203±0.50 N/A
ENSMUST00000168885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.790±0.00 N/A N/A
ENSMUST00000168922 3.016±0.73 5.684±0.00 1.968±0.00 2.083±0.34 3.756±0.55 3.320±0.64 N/A 2.819±0.91 2.013±0.97 3.821±0.57 1.347±0.22 5.319±0.70 1.853±0.50 0.935±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002161 IEA aminoacyl-tRNA editing activity
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004832 IEA valine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006418 IEA tRNA aminoacylation for protein translation
GO:0006438 IEA valyl-tRNA aminoacylation
GO:0006450 IEA regulation of translational fidelity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056717 vars2 valyl-tRNA synthetase 2, mitochondrial (putative) protein_coding Danio_rerio
ENSG00000137411 VARS2 valyl-tRNA synthetase 2, mitochondrial protein_coding Homo_sapiens

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