| Transcript ID | Breast | Colon | Ovary | Testis |
|---|---|---|---|---|
| ENST00000542001 | 0.409±0.00 | 0.347±0.00 | 1.775±0.73 | 2.163±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | valyl-tRNA synthetase 2, mitochondrial | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000542001  |
VARS2-202 |
ENSG00000137411 |
9606 | + |
6:30914205-30926456  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00090O | CIL_00090O_0001 | VISTA | 6:30539989-31144784 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000166 | IEA | nucleotide binding |
| GO:0002161 | IEA | aminoacyl-tRNA editing activity |
| GO:0004812 | IEA | aminoacyl-tRNA ligase activity |
| GO:0004832 | IEA | valine-tRNA ligase activity |
| GO:0005524 | IEA | ATP binding |
| GO:0006418 | IEA | tRNA aminoacylation for protein translation |
| GO:0006438 | IEA | valyl-tRNA aminoacylation |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000043674
|
Vars2-001 | protein_coding | Mus_musculus | 0 | 3120 |
|
ENSMUST00000165787
|
Vars2-003 | retained_intron | Mus_musculus | 0 | 2556 |
|
ENSMUST00000168922
|
Vars2-002 | nonsense_mediated_decay | Mus_musculus | 0 | 1648 |
|
ENSMUST00000164404
|
Vars2-004 | nonsense_mediated_decay | Mus_musculus | 0 | 1190 |
|
ENSMUST00000164978
|
Vars2-007 | retained_intron | Mus_musculus | 0 | 656 |
|
ENSMUST00000171536
|
Vars2-009 | retained_intron | Mus_musculus | 0 | 568 |
|
ENSMUST00000169093
|
Vars2-011 | nonsense_mediated_decay | Mus_musculus | 0 | 514 |
|
ENSMUST00000164295
|
Vars2-005 | retained_intron | Mus_musculus | 0 | 477 |
|
ENSMUST00000165144
|
Vars2-008 | nonsense_mediated_decay | Mus_musculus | 0 | 457 |
|
ENSMUST00000168885
|
Vars2-010 | retained_intron | Mus_musculus | 0 | 401 |
|
ENSMUST00000170701
|
Vars2-006 | retained_intron | Mus_musculus | 0 | 289 |
|
ENSMUST00000174129
|
Vars2-012 | retained_intron | Mus_musculus | 0 | 268 |
