C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valyl-tRNA synthetase 2, mitochondrial
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321897 VARS2-001 ENSG00000137411 9606 + 6:30914205-30926459 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartLungOvaryENST00000321897
Transcript ID Adipose Heart Lung Ovary
ENST00000321897 1.044±0.00 1.123±0.00 1.010±0.28 2.561±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002161 IEA aminoacyl-tRNA editing activity
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004832 IEA valine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0006418 IEA:TAS tRNA aminoacylation for protein translation
GO:0006438 IEA valyl-tRNA aminoacylation
GO:0006450 IEA regulation of translational fidelity
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043674 Vars2-001 protein_coding Mus_musculus 0 3153
ENSMUST00000165787 Vars2-003 retained_intron Mus_musculus 0 2590
ENSMUST00000168922 Vars2-002 nonsense_mediated_decay Mus_musculus 0 1681
ENSMUST00000164404 Vars2-004 nonsense_mediated_decay Mus_musculus 0 1190
ENSMUST00000164978 Vars2-007 retained_intron Mus_musculus 0 656
ENSMUST00000171536 Vars2-009 retained_intron Mus_musculus 0 568
ENSMUST00000169093 Vars2-011 nonsense_mediated_decay Mus_musculus 0 514
ENSMUST00000164295 Vars2-005 retained_intron Mus_musculus 0 477
ENSMUST00000165144 Vars2-008 nonsense_mediated_decay Mus_musculus 0 457
ENSMUST00000168885 Vars2-010 retained_intron Mus_musculus 0 401
ENSMUST00000170701 Vars2-006 retained_intron Mus_musculus 0 289
ENSMUST00000174129 Vars2-012 retained_intron Mus_musculus 0 268

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