C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Src homology 2 domain containing F
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138606 SHF 9606 - 15:45167214-45201175 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290894 SHF-001 45167214-45201175 protein_coding
  ENST00000458022 SHF-008 45167713-45181207 protein_coding
  ENST00000558294 SHF-012 45167834-45175326 protein_coding
  ENST00000558685 SHF-011 45171846-45175269 protein_coding
  ENST00000559566 SHF-009 45171594-45178260 protein_coding
  ENST00000560471 SHF-006 45170666-45187955 protein_coding
  ENST00000560540 SHF-002 45167214-45187956 protein_coding
  ENST00000560734 SHF-004 45167251-45187952 protein_coding
  ENST00000561091 SHF-014 45174223-45187459 processed_transcript
  ENST00000561239 SHF-013 45170208-45173658 protein_coding
  ENST00000561278 SHF-010 45175380-45201116 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryTestisENST00000290894ENST00000458022ENST00000560471ENST00000560540ENST00000560734
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Testis
ENST00000290894 N/A N/A N/A N/A N/A N/A 1.049±0.00 N/A N/A N/A N/A N/A
ENST00000458022 N/A N/A 0.494±0.00 N/A N/A N/A N/A N/A 3.454±0.00 N/A N/A N/A
ENST00000560471 N/A N/A N/A 2.533±1.23 0.622±0.00 N/A N/A 0.304±0.00 N/A N/A N/A N/A
ENST00000560540 2.609±0.00 2.754±0.00 N/A N/A 2.162±0.00 7.477±0.00 N/A N/A 6.015±0.00 N/A 13.082±1.95 9.168±0.00
ENST00000560734 1.998±0.00 N/A N/A N/A N/A N/A 1.569±0.00 1.833±0.00 4.450±0.00 0.867±0.00 9.003±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DG CIL_0004DG_0001 CGP 15:45129933-45201175
CIL_0004NE CIL_0004NE_0001 CGP 15:45167214-45277845

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006915 IEA apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087607 SHF Src homology 2 domain containing F protein_coding Danio_rerio
ENSMUSG00000033256 Shf Src homology 2 domain containing F protein_coding Mus_musculus

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